• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

远程重基团振动对NADH/NAD模型反应中氢化物动力学同位素效应温度依赖性的影响研究

Study of the Effects of Remote Heavy Group Vibrations on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions.

作者信息

Singh Grishma, Austin Ava, Bai Mingxuan, Bradshaw Joshua, Hammann Blake A, Kabotso Daniel E K, Lu Yun

机构信息

Department of Chemistry, Southern Illinois University Edwardsville, Edwardsville, Illinois 62026, United States.

出版信息

ACS Omega. 2024 Apr 24;9(18):20593-20600. doi: 10.1021/acsomega.4c02383. eCollection 2024 May 7.

DOI:10.1021/acsomega.4c02383
PMID:38737086
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11080011/
Abstract

It has recently been observed that the temperature()-dependence of KIEs in H-tunneling reactions, characterized by isotopic activation energy difference (Δ = - ), is correlated to the rigidity of the tunneling ready states (TRSs) in enzymes. A more rigid system with narrowly distributed H-donor-acceptor distances (DADs) at the TRSs gives rise to a weaker -dependence of KIEs (i.e., a smaller Δ). Theoreticians have attempted to develop new H-tunneling models to explain this, but none has been universally accepted. In order to further understand the observations in enzymes and provide useful data to build new theoretical models, we have studied the electronic and solvent effects on Δ's for the hydride-tunneling reactions of NADH/NAD analogues. We found that a tighter charge-transfer (CT) complex system gives rises to a smaller Δ, consistent with the enzyme observations. In this paper, we use the remote heavy group (R) vibrational effects to mediate the system rigidity to study the rigidity-Δ relationship. The specific hypothesis is that slower vibrations of a heavier remote group would broaden the DAD distributions and increase the Δ value. Four NADH/NAD systems were studied in acetonitrile but most of such heavy group vibrations do not appear to significantly increase the Δ. The remote heavy group vibrations in these systems may have not affected the CT complexation rigidity to a degree that can significantly increase the DADs, and further, the Δ values.

摘要

最近观察到,以同位素活化能差(Δ = - )为特征的H-隧穿反应中动力学同位素效应(KIEs)的温度依赖性与酶中隧穿就绪态(TRSs)的刚性相关。在TRSs处具有狭窄分布的H-供体-受体距离(DADs)的更刚性系统会导致KIEs的温度依赖性较弱(即较小的Δ)。理论学家试图开发新的H-隧穿模型来解释这一现象,但没有一个被普遍接受。为了进一步理解酶中的这些观察结果并提供有用的数据来构建新的理论模型,我们研究了电子和溶剂对NADH/NAD类似物的氢化物隧穿反应的Δ的影响。我们发现,更紧密的电荷转移(CT)络合物系统会导致较小的Δ,这与酶中的观察结果一致。在本文中,我们利用远程重基团(R)振动效应来调节系统刚性,以研究刚性与Δ的关系。具体假设是,较重远程基团的较慢振动会拓宽DAD分布并增加Δ值。我们在乙腈中研究了四个NADH/NAD系统,但大多数此类重基团振动似乎并未显著增加Δ。这些系统中的远程重基团振动可能没有在能显著增加DADs进而增加Δ值的程度上影响CT络合刚性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c05/11080011/707505e2078b/ao4c02383_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c05/11080011/707505e2078b/ao4c02383_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c05/11080011/707505e2078b/ao4c02383_0003.jpg

相似文献

1
Study of the Effects of Remote Heavy Group Vibrations on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions.远程重基团振动对NADH/NAD模型反应中氢化物动力学同位素效应温度依赖性的影响研究
ACS Omega. 2024 Apr 24;9(18):20593-20600. doi: 10.1021/acsomega.4c02383. eCollection 2024 May 7.
2
Solvent Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects: Correlation to the Donor-Acceptor Distances.溶剂效应对氢化物动力学同位素效应的温度依赖性的影响:与供体-受体距离的关系。
J Phys Chem A. 2022 Oct 27;126(42):7675-7686. doi: 10.1021/acs.jpca.2c06065. Epub 2022 Oct 13.
3
Structural Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions in Acetonitrile: Charge-Transfer Complex Tightness Is a Key.乙腈中NADH/NAD模型反应的氢化物动力学同位素效应温度依赖性的结构效应:电荷转移络合物的紧密性是关键。
J Org Chem. 2024 Mar 1;89(5):3184-3193. doi: 10.1021/acs.joc.3c02562. Epub 2024 Feb 16.
4
Replication of the Enzymatic Temperature Dependency of the Primary Hydride Kinetic Isotope Effects in Solution: Caused by the Protein-Controlled Rigidity of the Donor-Acceptor Centers?溶液中初级氢化物动力学同位素效应的酶促温度依赖性的复制:是由供体-受体中心的蛋白质控制的刚性引起的?
Biochemistry. 2019 Oct 1;58(39):4035-4046. doi: 10.1021/acs.biochem.9b00574. Epub 2019 Sep 13.
5
Direct Correlation between Donor-Acceptor Distance and Temperature Dependence of Kinetic Isotope Effects in Hydride-Tunneling Reactions of NADH/NAD Analogues.NADH/NAD类似物氢化物隧道反应中供体-受体距离与动力学同位素效应温度依赖性之间的直接关联
J Org Chem. 2021 Jun 4;86(11):7500-7507. doi: 10.1021/acs.joc.1c00497. Epub 2021 May 26.
6
Correlation of temperature dependence of hydride kinetic isotope effects with donor-acceptor distances in two solvents of different polarities.在两种不同极性溶剂中,氢化物动力学同位素效应的温度依赖性与给体-受体距离的相关性。
Org Biomol Chem. 2023 Jun 21;21(24):5090-5097. doi: 10.1039/d3ob00718a.
7
Substituent Effects on Temperature Dependence of Kinetic Isotope Effects in Hydride-Transfer Reactions of NADH/NAD Analogues in Solution: Reaction Center Rigidity Is the Key.取代基效应对溶液中 NADH/NAD 类似物氢化物转移反应动力学同位素效应温度依赖性的影响:反应中心刚性是关键。
Org Lett. 2020 Aug 7;22(15):5963-5967. doi: 10.1021/acs.orglett.0c02049. Epub 2020 Jul 14.
8
Steric effects on the primary isotope dependence of secondary kinetic isotope effects in hydride transfer reactions in solution: caused by the isotopically different tunneling ready state conformations?立体效应对溶液中氢化物转移反应次级动力学同位素效应的主要同位素依赖性的影响:是否由同位素不同的隧穿准备状态构象引起?
J Am Chem Soc. 2015 May 27;137(20):6653-61. doi: 10.1021/jacs.5b03085. Epub 2015 May 15.
9
Computational Replication of the Primary Isotope Dependence of Secondary Kinetic Isotope Effects in Solution Hydride-Transfer Reactions: Supporting the Isotopically Different Tunneling Ready State Conformations.溶液中氢化物转移反应中二级动力学同位素效应的初级同位素依赖性的计算复制:支持同位素不同的隧穿就绪态构象
J Phys Chem A. 2016 Jun 30;120(25):4277-84. doi: 10.1021/acs.jpca.6b03571. Epub 2016 Jun 20.
10
Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.温度无关的动力学同位素效应为亚磷酸脱氢酶中氢化物隧穿的马库斯样模型提供了证据。
Biochemistry. 2019 Oct 15;58(41):4260-4268. doi: 10.1021/acs.biochem.9b00732. Epub 2019 Oct 7.

引用本文的文献

1
Structural Effects on the Hydride-Tunneling Kinetic Isotope Effects of NADH/NAD Model Reactions: Relating to the Donor-Acceptor Distances.NADH/NAD模型反应中氢化物隧穿动力学同位素效应的结构影响:与供体-受体距离的关系
J Org Chem. 2025 Feb 28;90(8):3110-3115. doi: 10.1021/acs.joc.4c03080. Epub 2025 Feb 13.

本文引用的文献

1
Structural Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD Model Reactions in Acetonitrile: Charge-Transfer Complex Tightness Is a Key.乙腈中NADH/NAD模型反应的氢化物动力学同位素效应温度依赖性的结构效应:电荷转移络合物的紧密性是关键。
J Org Chem. 2024 Mar 1;89(5):3184-3193. doi: 10.1021/acs.joc.3c02562. Epub 2024 Feb 16.
2
Correlation of temperature dependence of hydride kinetic isotope effects with donor-acceptor distances in two solvents of different polarities.在两种不同极性溶剂中,氢化物动力学同位素效应的温度依赖性与给体-受体距离的相关性。
Org Biomol Chem. 2023 Jun 21;21(24):5090-5097. doi: 10.1039/d3ob00718a.
3
Solvent Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects: Correlation to the Donor-Acceptor Distances.
溶剂效应对氢化物动力学同位素效应的温度依赖性的影响:与供体-受体距离的关系。
J Phys Chem A. 2022 Oct 27;126(42):7675-7686. doi: 10.1021/acs.jpca.2c06065. Epub 2022 Oct 13.
4
Direct Correlation between Donor-Acceptor Distance and Temperature Dependence of Kinetic Isotope Effects in Hydride-Tunneling Reactions of NADH/NAD Analogues.NADH/NAD类似物氢化物隧道反应中供体-受体距离与动力学同位素效应温度依赖性之间的直接关联
J Org Chem. 2021 Jun 4;86(11):7500-7507. doi: 10.1021/acs.joc.1c00497. Epub 2021 May 26.
5
Oscillatory Active-site Motions Correlate with Kinetic Isotope Effects in Formate Dehydrogenase.甲酸脱氢酶中振荡性活性位点运动与动力学同位素效应相关。
ACS Catal. 2019 Dec 6;9(12):11199-11206. doi: 10.1021/acscatal.9b03345. Epub 2019 Oct 25.
6
Substituent Effects on Temperature Dependence of Kinetic Isotope Effects in Hydride-Transfer Reactions of NADH/NAD Analogues in Solution: Reaction Center Rigidity Is the Key.取代基效应对溶液中 NADH/NAD 类似物氢化物转移反应动力学同位素效应温度依赖性的影响:反应中心刚性是关键。
Org Lett. 2020 Aug 7;22(15):5963-5967. doi: 10.1021/acs.orglett.0c02049. Epub 2020 Jul 14.
7
Isotopic Labeling of Formate Dehydrogenase Perturbs the Protein Dynamics.甲酸盐脱氢酶的同位素标记扰乱了蛋白质动力学。
J Phys Chem B. 2019 Dec 12;123(49):10403-10409. doi: 10.1021/acs.jpcb.9b08426. Epub 2019 Dec 2.
8
Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.温度无关的动力学同位素效应为亚磷酸脱氢酶中氢化物隧穿的马库斯样模型提供了证据。
Biochemistry. 2019 Oct 15;58(41):4260-4268. doi: 10.1021/acs.biochem.9b00732. Epub 2019 Oct 7.
9
Replication of the Enzymatic Temperature Dependency of the Primary Hydride Kinetic Isotope Effects in Solution: Caused by the Protein-Controlled Rigidity of the Donor-Acceptor Centers?溶液中初级氢化物动力学同位素效应的酶促温度依赖性的复制:是由供体-受体中心的蛋白质控制的刚性引起的?
Biochemistry. 2019 Oct 1;58(39):4035-4046. doi: 10.1021/acs.biochem.9b00574. Epub 2019 Sep 13.
10
Imbalanced Transition States from α-H/D and Remote β-Type N-CH/D Secondary Kinetic Isotope Effects on the NADH/NAD Analogues in Their Hydride Tunneling Reactions in Solution.α-H/D 和远程 β-N-CH/D 二级动力学同位素效应导致 NADH/NAD 类似物在溶液中氢隧穿反应中过渡态失衡。
J Org Chem. 2019 May 3;84(9):5431-5439. doi: 10.1021/acs.joc.9b00412. Epub 2019 Apr 9.