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溶液中初级氢化物动力学同位素效应的酶促温度依赖性的复制:是由供体-受体中心的蛋白质控制的刚性引起的?

Replication of the Enzymatic Temperature Dependency of the Primary Hydride Kinetic Isotope Effects in Solution: Caused by the Protein-Controlled Rigidity of the Donor-Acceptor Centers?

机构信息

Department of Chemistry , Southern Illinois University Edwardsville , Edwardsville , Illinois 62026 , United States.

出版信息

Biochemistry. 2019 Oct 1;58(39):4035-4046. doi: 10.1021/acs.biochem.9b00574. Epub 2019 Sep 13.

DOI:10.1021/acs.biochem.9b00574
PMID:31478638
Abstract

The change from the temperature independence of the primary (1°) H/D kinetic isotope effects (KIEs) in wild-type enzyme-catalyzed H-transfer reactions (Δ = - ∼ 0) to a strong temperature dependence with the mutated enzymes (Δ ≫ 0) has recently been frequently observed. This has prompted some enzymologists to develop new H-tunneling models to correlate Δ with the donor-acceptor distance (DAD) at the tunneling-ready state (TRS) as well as the protein thermal motions/dynamics that sample the short DAD's for H-tunneling to occur. While extensive evidence supporting or disproving the thermally activated DAD sampling concept has emerged, a comparable study of the simpler bimolecular H-tunneling reactions in solution has not been carried out. In particular, small Δ's (∼0) have not been found. In this paper, we report a study of the hydride-transfer reactions from four NADH models to the same hydride acceptor in acetonitrile. The Δ's were determined: 0.37 (small), 0.60, 0.99, and 1.53 kcal/mol (large). The α-secondary (2°) KIEs on the acceptor that serve as a ruler for the rigidity of reaction centers were previously reported or determined. All possible productive reactant complex (PRC) configurations were computed to provide insight into the structures of the TRS's. Relationships among structures, 2° KIEs, DAD's, and Δ's were discussed. The more rigid system with more suppressed 2° C-H vibrations at the TRS and more narrowly distributed DAD's in PRCs gave a smaller Δ. The results replicated the trend observed in enzymes versus mutated enzymes and appeared to support the concepts of different thermally activated DAD sampling processes in response to the rigid versus flexible donor-acceptor centers.

摘要

从野生型酶催化 H 转移反应中一级(1°)H/D 动力学同位素效应(KIE)的温度独立性(Δ= - ~0)到突变酶的强温度依赖性(Δ>0)的变化最近经常被观察到。这促使一些酶学家开发新的 H 隧穿模型,以将 Δ与隧穿准备态(TRS)下的供体-受体距离(DAD)以及蛋白质热运动/动力学相关联,这些动力学可以采样短 DAD 以进行 H 隧穿。虽然支持或反驳热激活 DAD 采样概念的大量证据已经出现,但在溶液中更简单的双分子 H 隧穿反应的类似研究尚未进行。特别是,没有发现小的Δ(∼0)。在本文中,我们报告了对来自四个 NADH 模型到乙腈中相同氢化物受体的氢转移反应的研究。确定了Δ:0.37(小),0.60,0.99 和 1.53 kcal/mol(大)。之前报道或确定了作为反应中心刚性的受体上的α-二级(2°)KIE。计算了所有可能的产物反应物复合物(PRC)构型,以深入了解 TRS 的结构。讨论了结构,2°KIE,DAD 和Δ之间的关系。TRS 处的反应中心刚性更强,2°C-H 振动受到更大抑制,PRC 中的 DAD 分布更窄的系统,Δ 更小。结果复制了在酶与突变酶中观察到的趋势,似乎支持不同的热激活 DAD 采样过程的概念,以响应刚性与柔性供体-受体中心。

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