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非编码基因变异在心肌病中的作用。

The role of noncoding genetic variants in cardiomyopathy.

作者信息

Htet Myo, Lei Shunyao, Bajpayi Sheetal, Zoitou Asimina, Chamakioti Myrsini, Tampakakis Emmanouil

机构信息

Department of Medicine, Division of Cardiology, Johns Hopkins University, Baltimore, MD, United States.

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, United States.

出版信息

Front Cardiovasc Med. 2023 May 22;10:1116925. doi: 10.3389/fcvm.2023.1116925. eCollection 2023.

DOI:10.3389/fcvm.2023.1116925
PMID:37283586
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10239966/
Abstract

Cardiomyopathies remain one of the leading causes of morbidity and mortality worldwide. Environmental risk factors and genetic predisposition account for most cardiomyopathy cases. As with all complex diseases, there are significant challenges in the interpretation of the molecular mechanisms underlying cardiomyopathy-associated genetic variants. Given the technical improvements and reduced costs of DNA sequence technologies, an increasing number of patients are now undergoing genetic testing, resulting in a continuously expanding list of novel mutations. However, many patients carry noncoding genetic variants, and although emerging evidence supports their contribution to cardiac disease, their role in cardiomyopathies remains largely understudied. In this review, we summarize published studies reporting on the association of different types of noncoding variants with various types of cardiomyopathies. We focus on variants within transcriptional enhancers, promoters, intronic sites, and untranslated regions that are likely associated with cardiac disease. Given the broad nature of this topic, we provide an overview of studies that are relatively recent and have sufficient evidence to support a significant degree of causality. We believe that more research with additional validation of noncoding genetic variants will provide further mechanistic insights on the development of cardiac disease, and noncoding variants will be increasingly incorporated in future genetic screening tests.

摘要

心肌病仍然是全球发病和死亡的主要原因之一。环境风险因素和遗传易感性是大多数心肌病病例的病因。与所有复杂疾病一样,在解释心肌病相关基因变异的分子机制方面存在重大挑战。鉴于DNA测序技术的技术改进和成本降低,现在越来越多的患者正在接受基因检测,导致新突变的清单不断扩大。然而,许多患者携带非编码基因变异,尽管新出现的证据支持它们对心脏病的影响,但其在心肌病中的作用仍 largely understudied。在本综述中,我们总结了已发表的关于不同类型非编码变异与各种类型心肌病关联的研究。我们关注转录增强子、启动子、内含子位点和非翻译区中可能与心脏病相关的变异。鉴于该主题的广泛性,我们概述了相对较新且有足够证据支持显著因果关系程度的研究。我们相信,对非编码基因变异进行更多的额外验证研究将为心脏病的发展提供进一步的机制见解,并且非编码变异将越来越多地纳入未来的基因筛查测试中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d1/10239966/3203328b504a/fcvm-10-1116925-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d1/10239966/3203328b504a/fcvm-10-1116925-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58d1/10239966/3203328b504a/fcvm-10-1116925-g001.jpg

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本文引用的文献

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Hum Genomics. 2022 Nov 10;16(1):55. doi: 10.1186/s40246-022-00420-0.
2
Genome-wide fetalization of enhancer architecture in heart disease.基因组范围的心脏疾病增强子结构胎儿化。
Cell Rep. 2022 Sep 20;40(12):111400. doi: 10.1016/j.celrep.2022.111400.
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Identification of an elusive spliceogenic MYBPC3 variant in an otherwise genotype-negative hypertrophic cardiomyopathy pedigree.在一个基因型为阴性的肥厚型心肌病家系中鉴定出一种难以捉摸的MYBPC3剪接变异体。
Medicina (Kaunas). 2023 Aug 29;59(9):1567. doi: 10.3390/medicina59091567.
4
Advanced searching for hypertrophic cardiomyopathy heritability in real practice tomorrow.明日在实际应用中对肥厚型心肌病遗传因素进行高级检索。
Front Cardiovasc Med. 2023 Jul 31;10:1236539. doi: 10.3389/fcvm.2023.1236539. eCollection 2023.
Sci Rep. 2022 May 4;12(1):7284. doi: 10.1038/s41598-022-11159-y.
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Genetic Insights into Primary Restrictive Cardiomyopathy.原发性限制性心肌病的遗传学见解
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5
Common and Rare 5'UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics.心血管基因组学中改变上游开放阅读框的常见和罕见5'非翻译区变异体
Front Cardiovasc Med. 2022 Mar 21;9:841032. doi: 10.3389/fcvm.2022.841032. eCollection 2022.
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Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy.全基因组测序描绘了早发性心肌病中的调控、拷贝数和隐匿性剪接变异。
NPJ Genom Med. 2022 Mar 14;7(1):18. doi: 10.1038/s41525-022-00288-y.
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Recent Findings Related to Cardiomyopathy and Genetics.最近与心肌病和遗传学相关的发现。
Int J Mol Sci. 2021 Nov 20;22(22):12522. doi: 10.3390/ijms222212522.
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