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一个单一的 DNA 点突变导致半胱氨酸双加氧酶中的半胱氨酸-酪氨酸交联的形成。

A Single DNA Point Mutation Leads to the Formation of a Cysteine-Tyrosine Crosslink in the Cysteine Dioxygenase from .

机构信息

Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States.

Mass Spectrometry Core, Biotechnology Center, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States.

出版信息

Biochemistry. 2023 Jun 20;62(12):1964-1975. doi: 10.1021/acs.biochem.3c00083. Epub 2023 Jun 7.

DOI:10.1021/acs.biochem.3c00083
PMID:37285547
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10697556/
Abstract

Cysteine dioxygenase (CDO) is a non-heme iron-containing enzyme that catalyzes the oxidation of cysteine (Cys) to cysteine sulfinic acid (CSA). Crystal structures of eukaryotic CDOs revealed the presence of an unusual crosslink between the sulfur of a cysteine residue (C93 in CDO, CDO) and a carbon atom adjacent to the phenyl group of a tyrosine residue (Y157). Formation of this crosslink occurs over time as a byproduct of catalysis and increases the catalytic efficiency of CDO by at least 10-fold. Interestingly, in bacterial CDOs, the residue corresponding to C93 is replaced by a highly conserved glycine (G82 in CDO, CDO), which precludes the formation of a C-Y crosslink in these enzymes; yet bacterial CDOs achieve turnover rates paralleling those of fully crosslinked eukaryotic CDOs. In the present study, we prepared the G82C variant of CDO to determine if a single DNA point mutation could lead to C-Y crosslink formation in this enzyme. We used gel electrophoresis, peptide mass spectrometry, electron paramagnetic resonance spectroscopy, and kinetic assays to characterize this variant alongside the natively crosslinked wild-type (WT) CDO and the natively non-crosslinked WT CDO. Collectively, our results provide compelling evidence that the G82C CDO variant is indeed capable of C-Y crosslink formation. Our kinetic studies indicate that G82C CDO has a reduced catalytic efficiency compared to WT CDO and that activity increases as the ratio of crosslinked to non-crosslinked enzyme increases. Finally, by carrying out a bioinformatic analysis of the CDO family, we were able to identify a large number of putatively crosslinked bacterial CDOs, the majority of which are from Gram-negative pathogenic bacteria.

摘要

半胱氨酸双加氧酶 (CDO) 是一种非血红素铁酶,可催化半胱氨酸 (Cys) 氧化为半胱氨酸亚磺酸 (CSA)。真核生物 CDO 的晶体结构显示,在一个半胱氨酸残基的硫原子(CDO 中的 C93,CDO)和酪氨酸残基苯环侧的一个碳原子之间存在一种不寻常的交联。这种交联的形成是催化的副产物,至少使 CDO 的催化效率提高了 10 倍。有趣的是,在细菌 CDO 中,与 C93 对应的残基被高度保守的甘氨酸取代(CDO 中的 G82,CDO),这使得这些酶中不能形成 C-Y 交联;然而,细菌 CDO 的周转率与完全交联的真核 CDO 相当。在本研究中,我们制备了 G82C 变体的 CDO,以确定单个 DNA 点突变是否可以导致该酶中 C-Y 交联的形成。我们使用凝胶电泳、肽质量光谱法、电子顺磁共振波谱和动力学测定来表征该变体以及天然交联的野生型(WT)CDO 和天然非交联的 WT CDO。总的来说,我们的结果提供了令人信服的证据,表明 G82C CDO 变体确实能够形成 C-Y 交联。我们的动力学研究表明,与 WT CDO 相比,G82C CDO 的催化效率降低,并且随着交联酶与非交联酶的比例增加,活性增加。最后,通过对 CDO 家族进行生物信息学分析,我们能够鉴定出大量假定的交联细菌 CDO,其中大多数来自革兰氏阴性致病性细菌。

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