Ranaivoarisoa Tahina Onina, Bai Wei, Rengasamy Karthikeyan, Steele Hope, Silberman Miriam, Olabode Jennifer, Bose Arpita
bioRxiv. 2023 May 17:2023.05.17.541174. doi: 10.1101/2023.05.17.541174.
With the increasing demand for sustainably produced renewable resources, it is important to look towards microorganisms capable of producing bioproducts such as biofuels and bioplastics. Though many systems for bioproduct production are well documented and tested in model organisms, it is essential to look beyond to non-model organisms to expand the field and take advantage of metabolically versatile strains. This investigation centers on TIE-1, a purple, non-sulfur autotrophic, and anaerobic bacterium capable of producing bioproducts that are comparable to their petroleum-based counterparts. To induce bioplastic overproduction, genes that might have a potential role in the PHB biosynthesis such as the regulator, and known for its ability to degrade PHB granules were deleted using markerless deletion. Mutants in pathways that might compete with polyhydroxybutyrate (PHB) production such as glycogen and nitrogen fixation previously created to increase -butanol production by TIE-1 were also tested. In addition, a phage integration system was developed to insert RuBisCO (RuBisCO form I and II genes) driven by a constitutive promoter into TIE- 1 genome. Our results show that deletion of the gene of the PHB pathway increases PHB productivity when TIE-1 was grown photoheterotrophically with butyrate and ammonium chloride (NH Cl). Mutants unable to make glycogen or fix dinitrogen gas show an increase in PHB productivity under photoautotrophic growth conditions with hydrogen. In addition, the engineered TIE-1 overexpressing RuBisCO form I and form II produces significantly more polyhydroxybutyrate than the wild type under photoheterotrophy with butyrate and photoautotrophy with hydrogen. Inserting RuBisCO genes into TIE-1 genome is a more effective strategy than deleting competitive pathways to increase PHB production in TIE-1. The phage integration system developed for TIE-1 thus creates numerous opportunities for synthetic biology in TIE-1.
随着对可持续生产的可再生资源需求的增加,关注能够生产生物燃料和生物塑料等生物产品的微生物变得很重要。尽管许多生物产品生产系统在模式生物中已有充分记录和测试,但有必要超越模式生物,探索非模式生物,以拓展该领域并利用代谢多样的菌株。本研究聚焦于TIE-1,一种紫色、非硫自养厌氧细菌,它能够生产与石油基同类产品相当的生物产品。为诱导生物塑料过量生产,使用无标记缺失技术删除了可能在聚羟基丁酸酯(PHB)生物合成中起潜在作用的基因,如调节基因,以及已知具有降解PHB颗粒能力的基因。之前为提高TIE-1的丁醇产量而构建的可能与聚羟基丁酸酯(PHB)生产竞争的途径(如糖原和固氮途径)中的突变体也进行了测试。此外,还开发了一种噬菌体整合系统,将由组成型启动子驱动的核酮糖-1,5-二磷酸羧化酶/加氧酶(RuBisCO,I型和II型基因)插入TIE-1基因组。我们的结果表明,当TIE-1在以丁酸盐和氯化铵(NH₄Cl)为光异养生长时,删除PHB途径的基因可提高PHB生产力。在以氢气为光自养生长条件下,无法合成糖原或固定氮气的突变体显示出PHB生产力的提高。此外,在以丁酸盐为光异养和以氢气为光自养条件下,过表达RuBisCO I型和II型的工程化TIE-1比野生型产生的聚羟基丁酸酯显著更多。将RuBisCO基因插入TIE-1基因组比删除竞争途径是提高TIE-1中PHB产量更有效的策略。因此,为TIE-1开发的噬菌体整合系统为TIE-1中的合成生物学创造了众多机会。