Identification of the yield traits related haplotype combinations of transcription factor genes in common wheat.

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A predominant objective in wheat breeding is improving yield-related traits. The homeodomain-leucine zipper (HD-Zip) transcription factor plays a significant role in plant growth and development. In this study, we cloned all homeologs of , which is a member of the HD-Zip class IV transcription factor family in wheat ( L.). Sequence polymorphism analysis showed that , , and formed five, six, and six haplotypes, respectively, and the genes were divided into two main haplotype groups. We also developed functional molecular markers. The genes were divided into eight main haplotype combinations. Association analysis and distinct population validation preliminarily indicated that genes modulate grain number per spike, effective spikelet number per spike, thousand kernel weight, and flag leaf area per plant in wheat. was the most effective haplotype combination of . Subcellular localization showed that TaHDZ-A34 was localized to the nucleus. The interacting proteins of TaHDZ-A34 were involved in protein synthesis/degradation, energy production and transportation, and photosynthesis. Geographic distribution and frequencies of haplotype combinations suggested that and were preferentially selected in Chinese wheat breeding programs. The high-yield-related haplotype combination provided beneficial genetic resources for the marker-assisted selection of new wheat cultivars.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s11032-022-01298-5.