Structural Biology Initiative, CUNY Advanced Science Research Center, New York, New York, USA.
Structural Biology Initiative, CUNY Advanced Science Research Center, New York, New York, USA; PhD. Program in Biochemistry, The Graduate Center - City University of New York, New York, New York, USA.
J Biol Chem. 2023 Aug;299(8):104934. doi: 10.1016/j.jbc.2023.104934. Epub 2023 Jun 17.
Integral to the protein structure/function paradigm, oligomeric state is typically conserved along with function across evolution. However, notable exceptions such as the hemoglobins show how evolution can alter oligomerization to enable new regulatory mechanisms. Here, we examine this linkage in histidine kinases (HKs), a large class of widely distributed prokaryotic environmental sensors. While the majority of HKs are transmembrane homodimers, members of the HWE/HisKA2 family can deviate from this architecture as exemplified by our finding of a monomeric soluble HWE/HisKA2 HK (EL346, a photosensing light-oxygen-voltage [LOV]-HK). To further explore the diversity of oligomerization states and regulation within this family, we biophysically and biochemically characterized multiple EL346 homologs and found a range of HK oligomeric states and functions. Three LOV-HK homologs are primarily dimeric with differing structural and functional responses to light, while two Per-ARNT-Sim-HKs interconvert between differentially active monomers and dimers, suggesting dimerization might control enzymatic activity for these proteins. Finally, we examined putative interfaces in a dimeric LOV-HK, finding that multiple regions contribute to dimerization. Our findings suggest the potential for novel regulatory modes and oligomeric states beyond those traditionally defined for this important family of environmental sensors.
蛋白质结构/功能范式的一个重要组成部分是,寡聚状态通常在进化过程中与功能一起得到保守。然而,血红蛋白等显著的例外情况表明,进化可以改变寡聚化以实现新的调节机制。在这里,我们研究了组氨酸激酶 (HKs) 中的这种联系,HKs 是一类广泛分布的原核环境传感器。虽然大多数 HKs 是跨膜同二聚体,但 HWE/HisKA2 家族的成员可以偏离这种结构,我们发现单体可溶性 HWE/HisKA2 HK (EL346,一种感光光-氧-电压 [LOV]-HK) 就是一个例子。为了进一步探索这个家族中寡聚状态和调节的多样性,我们对多个 EL346 同源物进行了生物物理和生物化学表征,并发现了一系列 HK 寡聚状态和功能。三个 LOV-HK 同源物主要是二聚体,对光的结构和功能反应不同,而两个 Per-ARNT-Sim-HKs 在不同活性单体和二聚体之间相互转换,表明二聚化可能控制这些蛋白质的酶活性。最后,我们检查了二聚体 LOV-HK 中的假定接口,发现多个区域有助于二聚化。我们的研究结果表明,除了这个重要的环境传感器家族传统定义的那些之外,可能存在新的调节模式和寡聚状态。