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理论研究中分子动力学和 DFT 计算对 1,4-苯并二氮杂䓬与 2-羟丙基-βCD 相互作用的见解。

Insights from molecular dynamics and DFT calculations into the interaction of 1,4-benzodiazepines with 2-hydroxypropyl-βCD in a theoretical study.

机构信息

InSilicoSci Computational Research Centre, Nikopardazesh Ltd., Karaj, Iran.

Department of Chemistry, University of Kurdistan, Sanandaj, Iran.

出版信息

Sci Rep. 2023 Jun 18;13(1):9866. doi: 10.1038/s41598-023-36385-w.

DOI:10.1038/s41598-023-36385-w
PMID:37332009
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10277284/
Abstract

This study delves into the interaction between benzodiazepine (BZD) drugs and 2-hydroxypropyl-β-cyclodextrin (2HPβCD), a cyclodextrin (CD) known to improve drug delivery and enhance therapeutic outcomes. We find that the 2HPβCD's atoms become more rigid in the presence of chlordiazepoxide (CDP), clonazepam (CLZ), and diazepam (DZM), whereas they become more flexible in the presence of nordazepam (NDM) and nitrazepam (NZP). We also investigated the structure of 2HPβCD and found that loading these drugs increases both the area and volume of the 2HPβCD cavity, making it more suitable for drug delivery. Moreover, this research found that all drugs exhibited negative values for the binding free energy, indicating thermodynamic favorability and improved solubility. The binding free energy order of the BZDs was consistent in both molecular dynamics and Monte Carlo methods, with CDP and DZM having the highest affinity for binding. We also analyzed the contribution of different interaction energies in binding between the carrier and the drugs and found that Van der Waals energy is the primary component. Our results indicate that the number of hydrogen bonds between 2HPβCD/water slightly decreases in the presence of BZDs, but the hydrogen bond's quality remains constant.

摘要

本研究探讨了苯二氮䓬(BZD)类药物与 2-羟丙基-β-环糊精(2HPβCD)之间的相互作用,2HPβCD 是一种已知可改善药物传递并提高治疗效果的环糊精(CD)。我们发现,在氯氮䓬(CDP)、氯硝西泮(CLZ)和地西泮(DZM)存在的情况下,2HPβCD 的原子变得更加僵硬,而在去甲西泮(NDM)和硝西泮(NZP)存在的情况下,它们变得更加灵活。我们还研究了 2HPβCD 的结构,发现加载这些药物会增加 2HPβCD 腔的面积和体积,使其更适合药物传递。此外,这项研究发现所有药物的结合自由能均为负值,表明热力学有利且溶解度提高。在分子动力学和蒙特卡罗方法中,BZD 的结合自由能顺序一致,CDP 和 DZM 具有最高的结合亲和力。我们还分析了载体与药物之间结合的不同相互作用能的贡献,发现范德华能是主要成分。我们的结果表明,在 BZD 存在的情况下,2HPβCD/水之间氢键的数量略有减少,但氢键的质量保持不变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/475ebab98e71/41598_2023_36385_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/53c09cbe5672/41598_2023_36385_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/2157b2f82bd4/41598_2023_36385_Fig2a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/ae2433655cfa/41598_2023_36385_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/5a32e58561ec/41598_2023_36385_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/0f3c847b40c2/41598_2023_36385_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/475ebab98e71/41598_2023_36385_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/53c09cbe5672/41598_2023_36385_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/2157b2f82bd4/41598_2023_36385_Fig2a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/ae2433655cfa/41598_2023_36385_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/5a32e58561ec/41598_2023_36385_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/0f3c847b40c2/41598_2023_36385_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d888/10277284/475ebab98e71/41598_2023_36385_Fig6_HTML.jpg

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