Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011.
Macromolecular X-ray Crystallography Facility, Iowa State University, Ames, IA 50011.
Proc Natl Acad Sci U S A. 2023 Jun 27;120(26):e2221549120. doi: 10.1073/pnas.2221549120. Epub 2023 Jun 20.
Cytochromes P450 (CYPs) are heme-thiolate monooxygenases that prototypically catalyze the insertion of oxygen into unactivated C-H bonds but are capable of mediating more complex reactions. One of the most remarked-upon alternative reactions occurs during biosynthesis of the gibberellin A (GA) phytohormones, involving hydrocarbon ring contraction with coupled aldehyde extrusion of -kaurenoic acid to form the first gibberellin intermediate. While the unusual nature of this reaction has long been noted, its mechanistic basis has remained opaque. Building on identification of the relevant CYP114 from bacterial GA biosynthesis, detailed structure-function studies are reported here, including development of in vitro assays as well as crystallographic analyses both in the absence and presence of substrate. These structures provided insight into enzymatic catalysis of this unusual reaction, as exemplified by identification of a key role for the "missing" acid from an otherwise highly conserved acid-alcohol pair of residues. Notably, the results demonstrate that ring contraction requires dual factors, both the use of a dedicated ferredoxin and absence of the otherwise conserved acidic residue, with exclusion of either limiting turnover to just the initiating and more straightforward hydroxylation. The results provide detailed insight into the enzymatic structure-function relationships underlying this fascinating reaction and support the use of a semipinacol mechanism for the unusual ring contraction reaction.
细胞色素 P450(CYPs)是血红素硫醇单加氧酶,典型地催化氧插入非活化的 C-H 键,但能够介导更复杂的反应。最引人注目的替代反应之一发生在赤霉素 A(GA)植物激素的生物合成过程中,涉及烃环收缩,同时伴随着 -贝壳杉烯酸的醛基脱出,形成第一个赤霉素中间体。虽然这种反应的不寻常性质早已被注意到,但它的机制基础仍然不清楚。基于从细菌 GA 生物合成中鉴定出的相关 CYP114,本研究报告了详细的结构-功能研究,包括开发体外测定法以及在无底物和有底物的情况下进行晶体学分析。这些结构为理解这种不寻常反应的酶催化提供了深入的见解,例如确定了一个关键的作用,即“缺失”酸来自一个高度保守的酸-醇对残基。值得注意的是,结果表明环收缩需要双重因素,既需要专用的铁氧还蛋白,又需要没有通常保守的酸性残基,排除了任何一种因素都会限制只有起始和更直接的羟化作用的周转率。这些结果提供了对这一迷人反应的酶结构-功能关系的详细了解,并支持使用半频哪醇机制来解释不寻常的环收缩反应。