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鉴定一种用于预测骨肉瘤患者预后的新型MYC靶基因集特征。

Identification of a novel MYC target gene set signature for predicting the prognosis of osteosarcoma patients.

作者信息

Gong Deliang, Zhao Qingzhong, Liu Jun, Zhao Shibing, Yi Chengfeng, Lv Jianwei, Yu Hang, Bian Erbao, Tian Dasheng

机构信息

Department of Orthopaedics, The Second Affiliated Hospital of Anhui Medical University, Hefei, China.

Institute of Orthopaedics, Research Center for Translational Medicine, The Second Affiliated Hospital of Anhui Medical University, Hefei, China.

出版信息

Front Oncol. 2023 Jun 5;13:1169430. doi: 10.3389/fonc.2023.1169430. eCollection 2023.

Abstract

Osteosarcoma is a primary malignant tumor found mainly in teenagers and young adults. Patients have very little long-term survival. controls tumor initiation and progression by regulating the expression of its target genes; thus, constructing a risk signature of osteosarcoma target gene set will benefit the evaluation of both treatment and prognosis. In this paper, we used GEO data to download the ChIP-seq data of to obtain the target gene. Then, a risk signature consisting of 10 target genes was developed using Cox regression analysis. The signature indicates that patients in the high-risk group performed poorly. After that, we verified it in the GSE21257 dataset. In addition, the difference in tumor immune function among the low- and high-risk populations was compared by single sample gene enrichment analysis. Immunotherapy and prediction of response to the anticancer drug have shown that the risk signature of the target gene set was positively correlated with immune checkpoint response and drug sensitivity. Functional analysis has demonstrated that these genes are enriched in malignant tumors. Finally, was selected for functional experimentation. silence has limited osteosarcoma cell migration, invasion, and proliferation. Therefore, these findings indicated that the target gene set risk signature could be used as a potential therapeutic target and prognostic indicator in patients with osteosarcoma.

摘要

骨肉瘤是一种主要发生在青少年和年轻成年人中的原发性恶性肿瘤。患者的长期生存率极低。[某基因]通过调节其靶基因的表达来控制肿瘤的发生和进展;因此,构建骨肉瘤靶基因集的风险特征将有助于评估治疗效果和预后。在本文中,我们利用基因表达综合数据库(GEO)数据下载了[某基因]的染色质免疫沉淀测序(ChIP-seq)数据,以获得[某基因]的靶基因。然后,使用Cox回归分析开发了一个由10个[某基因]靶基因组成的风险特征。该特征表明,高危组患者的表现较差。之后,我们在GSE21257数据集中对其进行了验证。此外,通过单样本基因富集分析比较了低危和高危人群之间肿瘤免疫功能的差异。免疫治疗和抗癌药物反应预测表明,[某基因]靶基因集的风险特征与免疫检查点反应和药物敏感性呈正相关。功能分析表明,这些基因在恶性肿瘤中富集。最后,选择[某基因]进行功能实验。[某基因]的沉默限制了骨肉瘤细胞的迁移、侵袭和增殖。因此,这些发现表明,[某基因]靶基因集风险特征可作为骨肉瘤患者潜在的治疗靶点和预后指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad75/10277635/395f7241d86f/fonc-13-1169430-g001.jpg

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