Physical Sciences, Sunnybrook Research Institute, Toronto, ON, Canada.
Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.
J Natl Cancer Inst. 2023 Oct 9;115(10):1145-1156. doi: 10.1093/jnci/djad106.
The recent expansion of human genomics repositories has facilitated the discovery of novel TP53 variants in populations of different ethnic origins. Interpreting TP53 variants is a major clinical challenge because they are functionally diverse, confer highly variable predisposition to cancer (including elusive low-penetrance alleles), and interact with genetic modifiers that alter tumor susceptibility. Here, we discuss how a cancer risk continuum may relate to germline TP53 mutations on the basis of our current review of genotype-phenotype studies and an integrative analysis combining functional and sequencing datasets. Our study reveals that each ancestry contains a distinct TP53 variant landscape defined by enriched ethnic-specific alleles. In particular, the discovery and characterization of suspected low-penetrance ethnic-specific variants with unique functional consequences, including P47S (African), G334R (Ashkenazi Jewish), and rs78378222 (Icelandic), may provide new insights in terms of managing cancer risk and the efficacy of therapy. Additionally, our analysis highlights infrequent variants linked to milder cancer phenotypes in various published reports that may be underdiagnosed and require further investigation, including D49H in East Asians and R181H in Europeans. Overall, the sequencing and projected functions of TP53 variants arising within ethnic populations and their interplay with modifiers, as well as the emergence of CRISPR screens and AI tools, are now rapidly improving our understanding of the cancer susceptibility spectrum, leading toward more accurate and personalized cancer risk assessments.
人类基因组学存储库的最近扩展促进了在不同种族起源的人群中发现新的 TP53 变体。解释 TP53 变体是一个主要的临床挑战,因为它们具有不同的功能,赋予了高度可变的癌症易感性(包括难以捉摸的低外显率等位基因),并且与改变肿瘤易感性的遗传修饰物相互作用。在这里,我们根据我们对基因型 - 表型研究的回顾以及结合功能和测序数据集的综合分析,讨论癌症风险连续统如何与种系 TP53 突变相关。我们的研究表明,每个祖先是由丰富的特定种族等位基因定义的独特的 TP53 变体景观。特别是,具有独特功能后果的可疑低外显率特定种族变体的发现和表征,包括 P47S(非洲)、G334R(阿什肯纳兹犹太)和 rs78378222(冰岛),可能在管理癌症风险和治疗效果方面提供新的见解。此外,我们的分析强调了在各种已发表的报告中与较温和的癌症表型相关的罕见变体,这些变体可能被漏诊,需要进一步研究,包括东亚的 D49H 和欧洲的 R181H。总的来说,在族裔人群中出现的 TP53 变体的测序和预测功能及其与修饰物的相互作用,以及 CRISPR 筛选和人工智能工具的出现,正在迅速提高我们对癌症易感性谱的理解,从而导致更准确和个性化的癌症风险评估。