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高通量基于图像的表型 siRNA 筛选揭示 B 细胞极化的分子基础。

Medium-throughput image-based phenotypic siRNA screen to unveil the molecular basis of B cell polarization.

机构信息

Institut Curie, PSL Research University, Inserm U932, Immunity and Cancer, 75005, Paris, France.

Institut Curie, PSL Research University, CurieCoreTech Mass Spectrometry Proteomics, 75005, Paris, France.

出版信息

Sci Data. 2023 Jun 23;10(1):401. doi: 10.1038/s41597-023-02301-0.

Abstract

Cell polarity is an essential and highly conserved process governing cell function. Cell polarization is generally triggered by an external signal that induces the relocation of the centrosome, thus defining the polarity axis of the cell. Here, we took advantage of B cells as a model to study cell polarity and perform a medium-throughput siRNA-based imaging screen to identify new molecular regulators of polarization. We first identified candidates based on a quantitative proteomic analysis of proteins differentially associated with the centrosome of resting non-polarized and stimulated polarized B cells. We then targeted 233 candidates in a siRNA screen and identified hits regulating the polarization of the centrosome and/or lysosomes in B cells upon stimulation. Our dataset of proteomics, images, and polarity indexes provides a valuable source of information for a broad community of scientists interested in the molecular mechanisms regulating cell polarity.

摘要

细胞极性是一个重要且高度保守的过程,控制着细胞的功能。细胞极化通常是由外部信号触发的,该信号诱导中心体的重新定位,从而定义了细胞的极性轴。在这里,我们利用 B 细胞作为模型来研究细胞极性,并进行了基于高通量 siRNA 的成像筛选,以鉴定新的极化分子调节剂。我们首先基于定量蛋白质组学分析,鉴定了与静止非极化和受刺激极化 B 细胞中的中心体有差异关联的蛋白质,以此确定候选蛋白。然后,我们在 siRNA 筛选中靶向 233 个候选蛋白,并鉴定出调节刺激后 B 细胞中心体和/或溶酶体极化的命中靶标。我们的蛋白质组学、图像和极性指数数据集为广大对调节细胞极性的分子机制感兴趣的科学家提供了有价值的信息来源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a62/10290135/2e6c9680f75d/41597_2023_2301_Fig1_HTML.jpg

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