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霍斯塔:被遗忘病毒的遗传与结构视角

Khosta: A Genetic and Structural Point of View of the Forgotten Virus.

作者信息

Scarpa Fabio, Imperia Elena, Ciccozzi Alessandra, Pascarella Stefano, Quaranta Miriana, Giovanetti Marta, Borsetti Alessandra, Petrosillo Nicola, Ciccozzi Massimo

机构信息

Department of Biomedical Sciences, University of Sassari, 07100 Sassari, Italy.

Unit of Medical Statistics and Molecular Epidemiology, University of Campus Bio-Medico, 00128 Rome, Italy.

出版信息

Infect Dis Rep. 2023 Jun 1;15(3):307-318. doi: 10.3390/idr15030031.

DOI:10.3390/idr15030031
PMID:37367190
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10298234/
Abstract

Bats are well-known to be natural reservoirs of various zoonotic coronaviruses, which have caused outbreaks of severe acute respiratory syndrome (SARS) and the COVID-19 pandemic in 2002 and 2019, respectively. In late 2020, two new were found in Russia, isolated in bats, i.e., Khosta-1 in and Khosta-2 in . The potential danger associated with these new species of is that Khosta-2 has been found to interact with the same entry receptor as SARS-CoV-2. Our multidisciplinary approach in this study demonstrates that Khosta-1 and -2 currently appear to be not dangerous with low risk of spillover, as confirmed by prevalence data and by phylogenomic reconstruction. In addition, the interaction between Khosta-1 and -2 with ACE2 appears weak, and furin cleavage sites are absent. While the possibility of a spillover event cannot be entirely excluded, it is currently highly unlikely. This research further emphasizes the importance of assessing the zoonotic potential of widely distributed batborne CoV in order to monitor changes in genomic composition of viruses and prevent spillover events (if any).

摘要

众所周知,蝙蝠是多种人畜共患冠状病毒的天然宿主,这些病毒分别在2002年和2019年引发了严重急性呼吸综合征(SARS)疫情和新冠疫情。2020年末,在俄罗斯发现了两种新型冠状病毒,它们分别从蝙蝠中分离出来,即克拉斯诺亚尔斯克1号病毒(Khosta-1)和克拉斯诺亚尔斯克2号病毒(Khosta-2)。与这些新型冠状病毒相关的潜在危险在于,已发现克拉斯诺亚尔斯克2号病毒与严重急性呼吸综合征冠状病毒2(SARS-CoV-2)使用相同的进入受体。我们在本研究中采用的多学科方法表明,根据流行率数据和系统发育基因组重建结果,克拉斯诺亚尔斯克1号病毒和2号病毒目前似乎并不危险,溢出风险较低。此外,克拉斯诺亚尔斯克1号病毒和2号病毒与血管紧张素转换酶2(ACE2)之间的相互作用似乎较弱,并且不存在弗林蛋白酶切割位点。虽然不能完全排除溢出事件的可能性,但目前这种可能性非常小。这项研究进一步强调了评估广泛分布的蝙蝠传播冠状病毒人畜共患潜力的重要性,以便监测病毒基因组组成的变化并预防溢出事件(如果有)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/939200fe81e1/idr-15-00031-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/df8de8a9c362/idr-15-00031-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/388b51051ba7/idr-15-00031-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/8a11b4d01ad4/idr-15-00031-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/3c446a134f5e/idr-15-00031-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/939200fe81e1/idr-15-00031-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/df8de8a9c362/idr-15-00031-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/388b51051ba7/idr-15-00031-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/8a11b4d01ad4/idr-15-00031-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/3c446a134f5e/idr-15-00031-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046d/10298234/939200fe81e1/idr-15-00031-g005.jpg

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Genome-based comparison between the recombinant SARS-CoV-2 XBB and its parental lineages.基于基因组的重组严重急性呼吸综合征冠状病毒2(SARS-CoV-2)XBB与其亲本谱系之间的比较。
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Genetic Variability of the Monkeypox Virus Clade IIb B.1.猴痘病毒进化枝IIb B.1的基因变异性
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An ACE2-dependent Sarbecovirus in Russian bats is resistant to SARS-CoV-2 vaccines.俄罗斯蝙蝠体内一种依赖 ACE2 的沙贝科病毒对 SARS-CoV-2 疫苗具有抗性。
PLoS Pathog. 2022 Sep 22;18(9):e1010828. doi: 10.1371/journal.ppat.1010828. eCollection 2022 Sep.
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Evolutionary remodelling of N-terminal domain loops fine-tunes SARS-CoV-2 spike.N 端结构域环的进化重塑精细调节了 SARS-CoV-2 刺突。
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