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静息态研究方法在. 中的系统评价

A Systematic Review on Quiescent State Research Approaches in .

机构信息

Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, 30-387 Krakow, Poland.

Malopolska Centre of Biotechnology, Jagiellonian University, 30-387 Krakow, Poland.

出版信息

Cells. 2023 Jun 12;12(12):1608. doi: 10.3390/cells12121608.

Abstract

Quiescence, the temporary and reversible arrest of cell growth, is a fundamental biological process. However, the lack of standardization in terms of reporting the experimental details of quiescent cells and populations can cause confusion and hinder knowledge transfer. We employ the systematic review methodology to comprehensively analyze the diversity of approaches used to study the quiescent state, focusing on all published research addressing the budding yeast . We group research articles into those that consider all cells comprising the stationary-phase (SP) population as quiescent and those that recognize heterogeneity within the SP by distinguishing phenotypically distinct subpopulations. Furthermore, we investigate the chronological age of the quiescent populations under study and the methods used to induce the quiescent state, such as gradual starvation or abrupt environmental change. We also assess whether the strains used in research are prototrophic or auxotrophic. By combining the above features, we identify 48 possible experimental setups that can be used to study quiescence, which can be misleading when drawing general conclusions. We therefore summarize our review by proposing guidelines and recommendations pertaining to the information included in research articles. We believe that more rigorous reporting on the features of quiescent populations will facilitate knowledge transfer within and between disciplines, thereby stimulating valuable scientific discussion.

摘要

静止期,即细胞生长的暂时和可逆性停滞,是一个基本的生物学过程。然而,由于缺乏静止期细胞和群体实验细节报告的标准化,可能会导致混淆并阻碍知识的转移。我们采用系统综述方法,全面分析了研究静止期状态的各种方法的多样性,重点关注所有已发表的关于出芽酵母的研究。我们将研究论文分为两类:一类是将静止期(SP)群体中的所有细胞都视为静止期的,另一类是通过区分表型不同的亚群来认识 SP 内的异质性。此外,我们还研究了所研究的静止期群体的时间年龄以及诱导静止期的方法,如逐渐饥饿或突然的环境变化。我们还评估了研究中使用的菌株是原养型还是营养缺陷型。通过结合以上特征,我们确定了 48 种可能用于研究静止期的实验设置,但在得出一般结论时可能会产生误导。因此,我们通过提出与研究论文中包含的信息相关的指南和建议来总结我们的综述。我们相信,对静止期群体特征的更严格报告将促进学科内部和之间的知识转移,从而激发有价值的科学讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a351/10297366/75e400401be1/cells-12-01608-g001.jpg

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