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十七脱氧核苷酸d(CGCGCGTTTTTCGCGCG)在水溶液中形成B型和Z型发夹结构的热力学行为。

Thermodynamic behaviour of the heptadecadeoxynucleotide d(CGCGCGTTTTTCGCGCG) forming B and Z hairpins in aqueous solution.

作者信息

Xodo L E, Manzini G, Quadrifoglio F, van der Marel G A, van Boom J H

出版信息

Nucleic Acids Res. 1986 Jul 11;14(13):5389-98. doi: 10.1093/nar/14.13.5389.

DOI:10.1093/nar/14.13.5389
PMID:3737405
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC311547/
Abstract

UV and CD data of the partially self-complementary heptadecadeoxynucleotide d(CGCGCGTTTTTCGCGCG), obtained as a function of temperature, salt and strand concentration, show that: at low NaCl and strand concentration the oligomer exhibits, on increasing the temperature, a biphasic thermal profile which is indicative of two structural transitions, from dimeric duplex to hairpin and from hairpin to coil; the loop stabilizes enthalpically both B and Z hairpin structures with respect to the corresponding unconstrained hexamer d(CGCGCG) by a few Kcal/mol; the oligomer undergoes a B-Z transition which appears to be complete, at 0 degree C, when induced by NaClO4; by contrast the B-Z transition induced by NaCl does not reach completeness even at salt saturation. The independence of the denaturation temperature, at high salt conditions, on the oligomer concentration indicates that the Z structure is present also in the hairpin.

摘要

作为温度、盐浓度和链浓度函数获得的部分自我互补的十七聚脱氧核苷酸d(CGCGCGTTTTTCGCGCG)的紫外和圆二色数据表明:在低NaCl和链浓度下,随着温度升高,该寡聚物呈现双相热谱,这表明存在两个结构转变,从二聚体双链体到发夹结构,再从发夹结构到线圈结构;相对于相应的无约束六聚体d(CGCGCG),环在焓上使B型和Z型发夹结构稳定了几千卡/摩尔;该寡聚物发生B-Z转变,当由高氯酸钠诱导时,在0℃时似乎是完全的;相比之下,由NaCl诱导的B-Z转变即使在盐饱和时也未达到完全。在高盐条件下,变性温度与寡聚物浓度无关,这表明Z结构也存在于发夹结构中。

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