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通过 c-Src 独特结构域中的碱性残基对功能磷酸化位点的调节。

Modulation of Functional Phosphorylation Sites by Basic Residues in the Unique Domain of c-Src.

机构信息

BioNMR Laboratory, Departament de Química Inorgànica i Orgànica, Universitat de Barcelona (UB), Baldiri Reixac 10-12, 08028 Barcelona, Spain.

Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10, 08028 Barcelona, Spain.

出版信息

Molecules. 2023 Jun 10;28(12):4686. doi: 10.3390/molecules28124686.

Abstract

In contrast to the well-studied canonical regulatory mechanisms, the way by which the recently discovered Src N-terminal regulatory element (SNRE) modulates Src activity is not yet well understood. Phosphorylation of serine and threonine residues modulates the charge distribution along the disordered region of the SNRE and may affect a fuzzy complex with the SH3 domain that is believed to act as an information transduction element. The pre-existing positively charged sites can interact with the newly introduced phosphate groups by modulating their acidity, introducing local conformational restrictions, or by coupling various phosphosites into a functional unit. In this paper, we use pH-dependent NMR measurements combined with single point mutations to identify the interactions of basic residues with physiologically important phosphorylated residues and to characterize the effect of these interactions in neighbor residues, thus providing insight into the electrostatic network in the isolated disordered regions and in the entire SNRE. From a methodological point of view, the linear relationships observed between the mutation-induced pKa changes of the phosphate groups of phosphoserine and phosphothreonine and the pH-induced chemical shifts of the NH groups of these residues provide a very convenient alternative to identify interacting phosphate groups without the need to introduce point mutations on specific basic residues.

摘要

与研究充分的经典调控机制相反,最近发现的Src N 端调节元件 (SNRE) 调节 Src 活性的方式尚未被很好地理解。丝氨酸和苏氨酸残基的磷酸化调节了 SNRE 无规卷曲区域的电荷分布,可能会影响与 SH3 结构域形成的模糊复合物,该复合物被认为是一种信息转导元件。预先存在的正电荷位点可以通过调节其酸度、引入局部构象限制,或者通过将各种磷酸化位点耦合到一个功能单元,与新引入的磷酸基团相互作用。在本文中,我们使用 pH 依赖的 NMR 测量结合单点突变来识别碱性残基与生理上重要的磷酸化残基的相互作用,并对这些相互作用在相邻残基中的影响进行了表征,从而深入了解了孤立无序区域和整个 SNRE 中的静电网络。从方法论的角度来看,在磷酸丝氨酸和磷酸苏氨酸的磷酸基团的突变诱导 pKa 变化与这些残基的 NH 基团的 pH 诱导化学位移之间观察到的线性关系,为识别相互作用的磷酸基团提供了一种非常方便的替代方法,而无需在特定的碱性残基上引入点突变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7905/10304449/7ccf4ecd1f98/molecules-28-04686-g001.jpg

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