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恩纳司酮类似物的抗肿瘤活性、分子动力学模拟、密度泛函理论研究、药物代谢动力学预测及Eg5结合

antitumor activity, molecular dynamics simulation, DFT study, ADME prediction, and Eg5 binding of enastron analogues.

作者信息

Bouzina Abdeslem, Bouone Yousra Ouafa, Sekiou Omar, Aissaoui Mohamed, Ouk Tan-Sothea, Djemel Abdelhak, Mansouri Rachida, Ibrahim-Ouali Malika, Bouslama Zihad, Aouf Nour-Eddine

机构信息

Laboratory of Applied Organic Chemistry, Bioorganic Chemistry Group, Department of Chemistry, Sciences Faculty, Badji Mokhtar Annaba University Box 12 23000 Annaba Algeria

Environmental Research Center (CRE) 23000 Annaba Algeria.

出版信息

RSC Adv. 2023 Jun 28;13(28):19567-19584. doi: 10.1039/d3ra02904b. eCollection 2023 Jun 22.

Abstract

The objective of this study is to evaluate a series of molecules based on cyclosulfamide as potential anticancer agents. Additionally, the study aims to analyze the obtained results through studies; by conducting experiments and utilizing theoretical methods. In this context, we investigated the cytotoxic activity of enastron analogues on three human cell lines PRI (lymphoblastic cell line) derived from B-cell lymphoma. JURKAT (ATCC TIB-152) acute T cell leukaemia and K562 (ATCC CLL-243) is a chronic myelogenous leukaemia. Most of the tested compounds showed good inhibitory activity compared with the reference ligand (chlorambucil). The 5a derivative demonstrated the strongest effect against all cancer cells used. Furthermore, molecular docking simulations of the Eg5-enastron analogue complex revealed that studied molecules have the ability to inhibit the Eg5 enzyme, as evidenced by their calculated docking score. Following the promising results from the molecular docking study, the complex Eg5-4a underwent a 100 ns molecular dynamics simulation using Desmond. During the simulation, the receptor-ligand pairing demonstrated substantial stability after the initial 70 ns. In addition, we used DFT calculations to analyze the electronic and geometric characteristics of the studied compounds. The HOMO and LUMO band gap energies, and the molecular electrostatic potential surface were also deducted for the stable structure of each compound. Also, we studied the prediction of absorption, distribution, metabolism and excretion (ADME) of the compounds.

摘要

本研究的目的是评估一系列基于环磷酰胺的分子作为潜在的抗癌药物。此外,该研究旨在通过实验研究和运用理论方法来分析所获得的结果。在此背景下,我们研究了恩纳司酮类似物对三种人类细胞系的细胞毒性活性,这三种细胞系分别是源自B细胞淋巴瘤的PRI(淋巴细胞系)、JURKAT(ATCC TIB - 152)急性T细胞白血病细胞系以及K562(ATCC CLL - 243)慢性粒细胞白血病细胞系。与参考配体(苯丁酸氮芥)相比,大多数测试化合物显示出良好的抑制活性。5a衍生物对所有使用的癌细胞表现出最强的作用。此外,Eg5 - 恩纳司酮类似物复合物的分子对接模拟表明,所研究的分子具有抑制Eg5酶的能力,其计算得到的对接分数证明了这一点。基于分子对接研究取得的有前景的结果,使用Desmond对复合物Eg5 - 4a进行了100纳秒的分子动力学模拟。在模拟过程中,受体 - 配体配对在最初的70纳秒后显示出显著的稳定性。此外,我们使用密度泛函理论计算来分析所研究化合物的电子和几何特征。还推导了每种化合物稳定结构的最高占据分子轨道(HOMO)和最低未占据分子轨道(LUMO)带隙能量以及分子静电势表面。此外,我们还研究了这些化合物的吸收、分布、代谢和排泄(ADME)预测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82b/10301704/9a0bec1c9c42/d3ra02904b-f1.jpg

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