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通过生物信息学分析鉴定心力衰竭和骨关节炎中的免疫细胞浸润和诊断生物标志物。

Identifying immune cell infiltration and diagnostic biomarkers in heart failure and osteoarthritis by bioinformatics analysis.

机构信息

Tianjin Institute of Environmental and Operational Medicine, Tianjin, China.

Department of Clinical Laboratory, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

出版信息

Medicine (Baltimore). 2023 Jun 30;102(26):e34166. doi: 10.1097/MD.0000000000034166.

DOI:10.1097/MD.0000000000034166
PMID:37390254
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10313258/
Abstract

Heart failure (HF) and osteoarthritis (OA) are medical conditions that can significantly impact daily activities. Evidence has shown that HF and OA may share some pathogenic mechanisms. However, the underlying genomic mechanisms remain unclear. This study aimed to explore the underlying molecular mechanism and identify diagnostic biomarkers for HF and OA. With the cutoff criteria of fold change (FC) > 1.3 and P < .05, 920, 1500, 2195, and 2164 differentially expressed genes (DEGs) were identified in GSE57338, GSE116250, GSE114007, and GSE169077, respectively. After making the intersection of DEGs, we obtained 90 upregulated DEGs and 51 downregulated DEGs in HF datasets and 115 upregulated DEGs and 75 downregulated DEGs in OA datasets. Afterward, we conducted genome ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, protein-protein interaction (PPI) networks, and hub genes screening based on DEGs. Then, 4 common DEGs (fibroblast activation protein alpha [FAP], secreted frizzled-related protein 4 (SFRP4), Thy-1 cell surface antigen (THY1), matrix remodeling associated 5 [MXRA5]) between HF and OA were screened and validated in GSE5406 and GSE113825 datasets, based on which we established the support vector machine (SVM) models. The combined area under the receiver operating characteristic curve (AUC) of THY1, FAP, SFRP4, and MXRA5 in the HF training and test sets reached 0.949 and 0.928. While in the OA training set and test set, the combined AUC of THY1, FAP, SFRP4, and MXRA5 reached 1 and 1, respectively. The analysis of immune cells in HF revealed high levels of dendritic cell (DC), B cells, natural killer T cell (NKT), Type 1 regulatory T cell (Tr1), cytotoxic T cell (Tc), exhausted T cell (Tex), and mucosal-associated invariant T cell (MAIT), while displaying lower levels of monocytes, macrophages, NK, CD4 + T, gamma delta T (γδ T), T helper type 1 (Th1), T helper type 2 (Th2), and effector memory T cell (Tem). Moreover, the 4 common DEGs were positively correlated with DCs and B cells and negatively correlated with γδ T. In OA patients, the abundance of monocyte, macrophage, CD4 + naïve, and natural T regulatory cell (nTreg) was higher, while the infiltration of CD8 + T, γδ T, CD8 + naïve, and MAIT was lower. The expression of THY1 and FAP was significantly correlated with macrophage, CD8 + T, nTreg, and CD8 + naïve. SFRP4 was correlated with monocyte, CD8 + T, γδ T, CD4 + naïve, nTreg, CD8 + naïve and MAIT. MXRA5 was correlated with macrophage, CD8 + T, nTreg and CD8 + naïve. FAP, THY1, MXRA5, and SFRP4 may be diagnostic biomarkers for both HF and OA, and their correlation with immune cell infiltrations suggests shared immune pathogenesis.

摘要

心力衰竭(HF)和骨关节炎(OA)是会显著影响日常活动的两种医学病症。有证据表明,HF 和 OA 可能具有一些共同的发病机制。然而,其潜在的基因机制尚不清楚。本研究旨在探索 HF 和 OA 的潜在分子机制,并确定诊断生物标志物。使用倍数变化(FC)> 1.3 和 P <.05 的截止标准,在 GSE57338、GSE116250、GSE114007 和 GSE169077 中分别鉴定到 920、1500、2195 和 2164 个差异表达基因(DEGs)。在对 DEGs 进行交集后,我们在 HF 数据集和 OA 数据集中分别获得了 90 个上调 DEGs 和 51 个下调 DEGs,以及 115 个上调 DEGs 和 75 个下调 DEGs。之后,我们基于 DEGs 进行了基因本体论(GO)和京都基因与基因组百科全书(KEGG)分析、蛋白质-蛋白质相互作用(PPI)网络和关键基因筛选。然后,我们在 GSE5406 和 GSE113825 数据集中筛选并验证了 HF 和 OA 之间的 4 个共同 DEGs(成纤维细胞激活蛋白α(FAP)、分泌卷曲相关蛋白 4(SFRP4)、Thy-1 细胞表面抗原(THY1)、基质重塑相关蛋白 5(MXRA5)),并基于此建立了支持向量机(SVM)模型。THY1、FAP、SFRP4 和 MXRA5 在 HF 训练和测试集中的联合受试者工作特征曲线(ROC)下面积(AUC)达到 0.949 和 0.928。而在 OA 训练集和测试集中,THY1、FAP、SFRP4 和 MXRA5 的联合 AUC 分别达到 1 和 1。HF 中免疫细胞的分析表明,树突状细胞(DC)、B 细胞、自然杀伤 T 细胞(NKT)、1 型调节性 T 细胞(Tr1)、细胞毒性 T 细胞(Tc)、耗竭 T 细胞(Tex)和黏膜相关不变 T 细胞(MAIT)的水平较高,而单核细胞、巨噬细胞、NK、CD4 + T、γδ T、Th1、Th2 和效应记忆 T 细胞(Tem)的水平较低。此外,这 4 个共同的 DEGs 与 DC 和 B 细胞呈正相关,与 γδ T 呈负相关。在 OA 患者中,单核细胞、巨噬细胞、CD4 + 幼稚和自然 T 调节细胞(nTreg)的丰度较高,而 CD8 + T、γδ T、CD8 + 幼稚和 MAIT 的浸润程度较低。THY1 和 FAP 的表达与巨噬细胞、CD8 + T、nTreg 和 CD8 + 幼稚呈显著相关。SFRP4 与单核细胞、CD8 + T、γδ T、CD4 + 幼稚、nTreg、CD8 + 幼稚和 MAIT 相关。MXRA5 与巨噬细胞、CD8 + T、nTreg 和 CD8 + 幼稚相关。FAP、THY1、MXRA5 和 SFRP4 可能是 HF 和 OA 的诊断生物标志物,它们与免疫细胞浸润的相关性表明存在共同的免疫发病机制。

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