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Learning the shape of protein microenvironments with a holographic convolutional neural network.
Proc Natl Acad Sci U S A. 2024 Feb 6;121(6):e2300838121. doi: 10.1073/pnas.2300838121. Epub 2024 Feb 1.
2
An efficient and scalable top-down method for predicting structures of microbial communities.
Nat Comput Sci. 2021 Sep;1(9):619-628. doi: 10.1038/s43588-021-00131-x. Epub 2021 Sep 22.
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Population immunity predicts evolutionary trajectories of SARS-CoV-2.
Cell. 2023 Nov 9;186(23):5151-5164.e13. doi: 10.1016/j.cell.2023.09.022. Epub 2023 Oct 23.
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Personalized RNA neoantigen vaccines stimulate T cells in pancreatic cancer.
Nature. 2023 Jun;618(7963):144-150. doi: 10.1038/s41586-023-06063-y. Epub 2023 May 10.
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In vivo hypermutation and continuous evolution.
Nat Rev Methods Primers. 2022;2. doi: 10.1038/s43586-022-00130-w. Epub 2022 May 19.
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Role of Defensins in Tumor Biology.
Int J Mol Sci. 2023 Mar 9;24(6):5268. doi: 10.3390/ijms24065268.
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Immune selection determines tumor antigenicity and influences response to checkpoint inhibitors.
Nat Genet. 2023 Mar;55(3):451-460. doi: 10.1038/s41588-023-01313-1. Epub 2023 Mar 9.
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Mechanisms that promote the evolution of cross-reactive antibodies upon vaccination with designed influenza immunogens.
Cell Rep. 2023 Mar 28;42(3):112160. doi: 10.1016/j.celrep.2023.112160. Epub 2023 Mar 2.
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Large language models generate functional protein sequences across diverse families.
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