Department of Chemical, Biological and Materials Engineering, University of South Florida, Tampa, FL, USA.
Methods Mol Biol. 2023;2681:275-290. doi: 10.1007/978-1-0716-3279-6_15.
The ability to understand and characterize phosphorylation is important to the study of cell signaling and to synthetic biology approaches. Current methods for characterizing kinase-substrate interactions are limited by their inherently low throughput and the heterogeneity of samples analyzed. Recent advances in yeast surface display techniques provide new opportunities for studying individual kinase-substrate interactions in a stimulus-independent fashion. Here, we describe techniques for building substrate libraries into full-length domains of interest that, when co-localized intracellularly with individual kinases, result in the display of phosphorylated domains on the yeast surface, as well as fluorescence-activated cell sorting and magnetic bead selection techniques for enriching from these libraries based on phosphorylation state.
理解和描述磷酸化的能力对于细胞信号转导的研究和合成生物学方法都很重要。目前用于描述激酶-底物相互作用的方法受到其固有低通量和分析样本异质性的限制。酵母表面展示技术的最新进展为以非刺激依赖的方式研究单个激酶-底物相互作用提供了新的机会。在这里,我们描述了将底物文库构建到感兴趣的全长结构域中的技术,当这些文库与单个激酶在细胞内共定位时,会导致磷酸化结构域在酵母表面的显示,以及荧光激活细胞分选和磁性珠选择技术,可基于磷酸化状态从这些文库中进行富集。