Suppr超能文献

金黄色葡萄球菌和中间葡萄球菌之间可能具有致病性的鸡染色体岛的水平转移。

Horizontal transfer of probable chicken-pathogenicity chromosomal islands between Staphylococcus aureus and Staphylococcus agnetis.

机构信息

Program in Cell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.

Arkansas High Performance Computing Center, University of Arkansas, Fayetteville, AR, United States of America.

出版信息

PLoS One. 2023 Jul 5;18(7):e0283914. doi: 10.1371/journal.pone.0283914. eCollection 2023.

Abstract

Staphylococcus agnetis is an emerging pathogen in chickens but has been most commonly isolated from sub-clinical mastitis in bovines. Previous whole-genome analyses for known virulence genes failed to identify determinants for the switch from mild ductal infections in cattle to severe infections in poultry. We now report identification of a family of 15 kbp, 17-19 gene mobile genetic elements (MGEs) specific to chicken osteomyelitis and dermatitis isolates of S. agnetis. These MGEs can be present in multiple copies per genome. The MGE has been vectored on a Staphylococcus phage that separately lysogenized two S. agnetis osteomyelitis strains. The S. agnetis genome from a broiler breeder case of ulcerative dermatitis contains 2 orthologs of this MGE, not associated with a prophage. BLASTn and phylogenetic analyses show that there are closely related intact MGEs found in genomes of S. aureus. The genome from a 1980s isolate from chickens in Ireland contains 3 copies of this MGE. More recent chicken isolates descended from that genome (Poland 2009, Oklahoma 2010, and Arkansas 2018) contain 2 to 4 related copies. Many of the genes of this MGE can be identified in disparate regions of the genomes of other chicken isolates of S. aureus. BLAST searches of the NCBI databases detect no similar MGEs outside of S. aureus and S. agnetis. These MGEs encode no proteins related to those produced by Staphylococcus aureus Pathogenicity Islands, which have been associated with the transition of S. aureus from human to chicken hosts. Other than mobilization functions, most of the genes in these new MGEs annotate as hypothetical proteins. The MGEs we describe appear to represent a new family of Chromosomal Islands (CIs) shared amongst S. agnetis and S. aureus. Further work is needed to understand the role of these CIs/MGEs in pathogenesis. Analysis of horizontal transfer of genetic elements between isolates and species of Staphylococci provides clues to evolution of host-pathogen interactions as well as revealing critical determinants for animal welfare and human diseases.

摘要

凝结亚种是鸡群中的一种新兴病原体,但最常从牛的亚临床乳腺炎中分离出来。先前针对已知毒力基因的全基因组分析未能确定从牛的轻度导管感染向禽类的严重感染转变的决定因素。我们现在报告了一种 15 kbp 的家族的鉴定,该家族由 17-19 个基因的移动遗传元件(MGEs)组成,这些 MGEs 专门针对鸡骨髓炎和凝结亚种的皮肤病分离株。这些 MGEs 可以在每个基因组中以多个拷贝存在。MGE 被一种分别溶原化两种凝结亚种骨髓炎菌株的葡萄球菌噬菌体携带。来自溃疡性皮肤病肉鸡种鸡病例的凝结亚种基因组包含该 MGE 的 2 个直系同源物,与前噬菌体无关。BLASTn 和系统发育分析表明,在金黄色葡萄球菌基因组中发现了密切相关的完整 MGE。来自爱尔兰鸡的 1980 年代分离株的基因组包含该 MGE 的 3 个拷贝。该基因组的后续鸡分离株(波兰 2009 年、俄克拉荷马 2010 年和阿肯色 2018 年)包含 2 到 4 个相关拷贝。该 MGE 的许多基因可以在其他金黄色葡萄球菌鸡分离株的基因组的不同区域中识别出来。NCBI 数据库的 BLAST 搜索未在金黄色葡萄球菌和凝结亚种之外检测到类似的 MGE。这些 MGE 不编码与金黄色葡萄球菌致病性岛产生的那些相关的蛋白质,金黄色葡萄球菌致病性岛与金黄色葡萄球菌从人类到鸡宿主的转变有关。除了移动功能外,这些新 MGE 中的大多数基因注释为假设蛋白。我们描述的 MGE 似乎代表了凝结亚种和金黄色葡萄球菌之间共享的新的染色体岛(CI)家族。需要进一步研究这些 CI/MGE 在发病机制中的作用。分析葡萄球菌属分离株和种间遗传元件的水平转移为宿主-病原体相互作用的进化以及揭示动物福利和人类疾病的关键决定因素提供了线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8c4/10321648/d236c62c7829/pone.0283914.g001.jpg

相似文献

1
Horizontal transfer of probable chicken-pathogenicity chromosomal islands between Staphylococcus aureus and Staphylococcus agnetis.
PLoS One. 2023 Jul 5;18(7):e0283914. doi: 10.1371/journal.pone.0283914. eCollection 2023.
2
Whole-Genome Comparisons of Isolates from Cattle and Chickens.
Appl Environ Microbiol. 2020 Jun 2;86(12). doi: 10.1128/AEM.00484-20.
3
Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarray.
Microbiology (Reading). 2008 Jul;154(Pt 7):1949-1959. doi: 10.1099/mic.0.2007/015289-0.
4
The interplay between mobilome and resistome in .
mBio. 2024 Oct 16;15(10):e0242824. doi: 10.1128/mbio.02428-24. Epub 2024 Sep 17.
5
Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens.
PLoS One. 2015 Nov 25;10(11):e0143336. doi: 10.1371/journal.pone.0143336. eCollection 2015.
6
A Review of Current Knowledge on in Poultry.
Animals (Basel). 2020 Aug 14;10(8):1421. doi: 10.3390/ani10081421.
7
Analysis of genomes of bacterial isolates from lameness outbreaks in broilers.
Poult Sci. 2021 Jul;100(7):101148. doi: 10.1016/j.psj.2021.101148. Epub 2021 Mar 22.
8
The mobilome of Staphylococcus aureus from wild ungulates reveals epidemiological links at the animal-human interface.
Environ Pollut. 2024 Sep 1;356:124241. doi: 10.1016/j.envpol.2024.124241. Epub 2024 May 31.
9
Staphylococcus aureus mobile genetic elements.
Mol Biol Rep. 2014 Aug;41(8):5005-18. doi: 10.1007/s11033-014-3367-3. Epub 2014 Apr 13.

引用本文的文献

1
Study on molecular characteristics of Staphylococcus from yak milk-Xizang.
BMC Microbiol. 2025 Mar 17;25(1):153. doi: 10.1186/s12866-025-03868-x.
2
Phylogenomic Analyses of Three Distinct Lineages Uniting and from Diverse Hosts.
Microorganisms. 2024 Jul 29;12(8):1549. doi: 10.3390/microorganisms12081549.

本文引用的文献

1
Non-canonical Staphylococcus aureus pathogenicity island repression.
Nucleic Acids Res. 2022 Oct 28;50(19):11109-11127. doi: 10.1093/nar/gkac855.
2
Role of autophagy machinery dysregulation in bacterial chondronecrosis with osteomyelitis.
Poult Sci. 2022 May;101(5):101750. doi: 10.1016/j.psj.2022.101750. Epub 2022 Jan 30.
3
Emergence of methicillin resistance predates the clinical use of antibiotics.
Nature. 2022 Feb;602(7895):135-141. doi: 10.1038/s41586-021-04265-w. Epub 2022 Jan 5.
4
SignalP 6.0 predicts all five types of signal peptides using protein language models.
Nat Biotechnol. 2022 Jul;40(7):1023-1025. doi: 10.1038/s41587-021-01156-3. Epub 2022 Jan 3.
5
A regulatory cascade controls Staphylococcus aureus pathogenicity island activation.
Nat Microbiol. 2021 Oct;6(10):1300-1308. doi: 10.1038/s41564-021-00956-2. Epub 2021 Sep 13.
6
Analysis of genomes of bacterial isolates from lameness outbreaks in broilers.
Poult Sci. 2021 Jul;100(7):101148. doi: 10.1016/j.psj.2021.101148. Epub 2021 Mar 22.
7
Staphylococcus aureus Arsenal To Conquer the Lower Respiratory Tract.
mSphere. 2021 May 19;6(3):e00059-21. doi: 10.1128/mSphere.00059-21.
10
An overview of moonlighting proteins in Staphylococcus aureus infection.
Arch Microbiol. 2021 Mar;203(2):481-498. doi: 10.1007/s00203-020-02071-y. Epub 2020 Oct 13.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验