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通过综合分析鉴定食管癌中具有预后价值的枢纽基因和微小RNA

Identification of hub genes and microRNAs with prognostic values in esophageal cancer by integrated analysis.

作者信息

Mokhlesi Amir, Sharifi Zahra, Berimipour Ahmad, Taleahmad Sara, Talkhabi Mahmood

机构信息

Department of Animal Sciences and Marine Biology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, Iran.

Department of Stem Cells and Developmental Biology, Cell Science Research Center, Royan Institute for Stem Cell Biology and Technology, ACECR, Tehran, Iran.

出版信息

Noncoding RNA Res. 2023 Jun 4;8(3):459-470. doi: 10.1016/j.ncrna.2023.05.009. eCollection 2023 Sep.

Abstract

Esophageal cancer (EC) is the eighth most common cancer in the world, and the sixth most common cause of cancer-related mortality. The aim of the present study was to identify cell and molecular mechanisms involved in EC, and to provide the potential targets for diagnosis and treatment. Here, a microarray dataset (GSE20347) was screened to find differentially expressed genes (DEGs). Different bioinformatic methods were used to analyze the identified DEGs. The up-regulated DEGs were significantly involved in different biological processes and pathways including extracellular matrix organization and ECM-receptor interaction. FN1, CDK1, AURKA, TOP2A, FOXM1, BIRC5, CDC6, UBE2C, TTK, and TPX2 were identified as the most important genes among the up-regulated DEGs. Our analysis showed that has-miR-29a-3p, has-miR-29b-3p, has-miR-29c-3p, and has-miR-767-5p had the largest number of common targets among the up-regulated DEGs. These findings strengthen the understanding of EC development and progression, as well as representing potential markers for EC diagnosis and treatment.

摘要

食管癌(EC)是全球第八大常见癌症,也是癌症相关死亡的第六大常见原因。本研究的目的是确定食管癌相关的细胞和分子机制,并为诊断和治疗提供潜在靶点。在此,筛选了一个微阵列数据集(GSE20347)以寻找差异表达基因(DEG)。使用不同的生物信息学方法分析鉴定出的DEG。上调的DEG显著参与不同的生物学过程和途径,包括细胞外基质组织和ECM-受体相互作用。FN1、CDK1、AURKA、TOP2A、FOXM1、BIRC5、CDC6、UBE2C、TTK和TPX2被确定为上调DEG中最重要的基因。我们的分析表明,has-miR-29a-3p、has-miR-29b-3p、has-miR-29c-3p和has-miR-767-5p在上调的DEG中具有最多的共同靶点。这些发现加深了对食管癌发生发展的理解,也代表了食管癌诊断和治疗的潜在标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/059d/10319852/b2dfd8a79b03/gr1.jpg

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