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影响剪接的外显子变异 - 导致遗传性视网膜疾病的“隐藏”突变的机会。

Exonic Variants that Affect Splicing - An Opportunity for "Hidden" Mutations Causing Inherited Retinal Diseases.

机构信息

Department of Ophthalmology, Hadassah Medical Center, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.

出版信息

Adv Exp Med Biol. 2023;1415:183-187. doi: 10.1007/978-3-031-27681-1_27.


DOI:10.1007/978-3-031-27681-1_27
PMID:37440032
Abstract

Inherited retinal diseases (IRDs) are an extremely diverse group of ocular disorders characterized by progressive loss of photoreceptors leading to blindness. So far, pathogenic variants in over 300 genes are reported to structurally and functionally affect the retina resulting in visual impairment. Around 15% of all IRD mutations are known to affect an essential regulatory mechanism, pre-mRNA splicing, which contributes to the transcriptomic diversity. These variants disrupt potential donor and acceptor splice sites as well as other crucial cis-acting elements resulting in aberrant splicing. One group of these elements, the exonic splicing enhancers (ESEs), are involved in promoting exon definition and are likely to harbor "hidden" mutations since sequence-analyzing pipelines cannot identify them efficiently. The main focus of this review is to discuss the molecular mechanisms behind various exonic variants affecting splice sites and ESEs that lead to impaired splicing which in turn result in an IRD pathology.

摘要

遗传性视网膜疾病(IRDs)是一组极其多样化的眼部疾病,其特征是感光细胞进行性丧失,导致失明。到目前为止,据报道,超过 300 种基因的致病变体在结构和功能上影响视网膜,导致视力障碍。已知所有 IRD 突变的 15%左右会影响一个重要的调节机制,即前体 mRNA 剪接,这有助于转录组的多样性。这些变体破坏了潜在的供体和受体剪接位点以及其他关键的顺式作用元件,导致异常剪接。这些元件中的一组,即外显子剪接增强子(ESEs),参与促进外显子定义,并且可能存在“隐藏”突变,因为序列分析管道不能有效地识别它们。本篇综述的主要重点是讨论影响剪接位点和 ESEs 的各种外显子变体背后的分子机制,这些变体导致剪接受损,进而导致 IRD 病理学。

相似文献

[1]
Exonic Variants that Affect Splicing - An Opportunity for "Hidden" Mutations Causing Inherited Retinal Diseases.

Adv Exp Med Biol. 2023

[2]
Vulnerable exons, like ACADM exon 5, are highly dependent on maintaining a correct balance between splicing enhancers and silencers.

Hum Mutat. 2022-2

[3]
Splicing mutations in inherited retinal diseases.

Prog Retin Eye Res. 2021-1

[4]
Loss of exon identity is a common mechanism of human inherited disease.

Genome Res. 2011-7-12

[5]
Functional analysis of the CTNS gene exonic variants predicted to affect splicing.

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[6]
MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing.

Genome Biol. 2014-1-13

[7]
Computational analysis of splicing errors and mutations in human transcripts.

BMC Genomics. 2008-1-14

[8]
Exonic splicing enhancers contribute to the use of both 3' and 5' splice site usage of rat beta-tropomyosin pre-mRNA.

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[9]
Genomic features defining exonic variants that modulate splicing.

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[10]
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引用本文的文献

[1]
Targeted long-read cDNA sequencing reveals novel splice-altering pathogenic variants causing retinal dystrophies.

HGG Adv. 2025-4-18

[2]
Genetic and Clinical Analyses of the -c.226C>T Variant Resulting in a Dual Mutational Mechanism.

Genes (Basel). 2024-6-18

本文引用的文献

[1]
Anything but Ordinary - Emerging Splicing Mechanisms in Eukaryotic Gene Regulation.

Trends Genet. 2021-4

[2]
Rhodopsin: A Potential Biomarker for Neurodegenerative Diseases.

Front Neurosci. 2020-4-15

[3]
A Specific Macula-Predominant Retinal Phenotype Is Associated With the CDHR1 Variant c.783G>A, a Silent Mutation Leading to In-Frame Exon Skipping.

Invest Ophthalmol Vis Sci. 2019-8-1

[4]
Basal exon skipping and nonsense-associated altered splicing allows bypassing complete CEP290 loss-of-function in individuals with unusually mild retinal disease.

Hum Mol Genet. 2018-8-1

[5]
Splicing mutations in human genetic disorders: examples, detection, and confirmation.

J Appl Genet. 2018-8

[6]
The effect of the common c.2299delG mutation in USH2A on RNA splicing.

Exp Eye Res. 2014-3-4

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The evolution, impact and properties of exonic splice enhancers.

Genome Biol. 2013-12-20

[8]
Alternative splicing and retinal degeneration.

Clin Genet. 2013-6-5

[9]
The spliceosome: design principles of a dynamic RNP machine.

Cell. 2009-2-20

[10]
Therapeutic strategy to rescue mutation-induced exon skipping in rhodopsin by adaptation of U1 snRNA.

Hum Mutat. 2009-2

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