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基于液滴数字 PCR 技术建立褐飞虱酵母共生菌的快速检测方法。

Establishment of a Rapid Detection Method for Yeast-like Symbionts in Brown Planthopper Based on Droplet Digital PCR Technology.

机构信息

Zhejiang Provincial Key Laboratory of Biometrology and Inspection & Quarantine, College of Modern Science and Technology, China Jiliang University, Hangzhou 310018, China.

出版信息

Int J Mol Sci. 2023 Jul 4;24(13):11071. doi: 10.3390/ijms241311071.

DOI:10.3390/ijms241311071
PMID:37446249
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10341689/
Abstract

The brown planthopper (Stål) (BPH) is a typical monophagous sucking rice pest. Over the course of their evolution, BPH and its symbionts have established an interdependent and mutually beneficial relationship, with the symbionts being important to the growth, development, reproduction, and variation in virulence of BPH. Yeast-like symbionts (YLS), harbored in the abdomen fat body cells of BPH, are vital to the growth and reproduction of the host. In recent research, the symbionts in BPH have mainly been detected using blood cell counting, PCR, real-time quantitative PCR, and other methods. These methods are vulnerable to external interference, cumbersome, time consuming and laborious. Droplet digital PCR (ddPCR) does not need a standard curve, can achieve absolute quantification, does not rely on Cq values, and is more useful for analyzing copy number variation, gene mutations, and relative gene expression. A rapid detection method for the YLS of BPH based on ddPCR was established and optimized in this study. The results showed that the method's limits of detection for the two species of YLS ( symbionts and ) were 1.3 copies/μL and 1.2 copies/μL, respectively. The coefficient of variation of the sample repetition was less than 5%; therefore, the ddPCR method established in this study had good sensitivity, specificity, and repeatability. It can be used to detect the YLS of BPH rapidly and accurately.

摘要

褐飞虱(Stål)(BPH)是一种典型的单食性吸食水稻害虫。在进化过程中,BPH 及其共生菌建立了相互依存、互利共生的关系,共生菌对 BPH 的生长、发育、繁殖和毒力变异至关重要。酵母样共生菌(YLS)存在于 BPH 的腹部脂肪体细胞中,对宿主的生长和繁殖至关重要。在最近的研究中,主要使用血细胞计数、PCR、实时定量 PCR 等方法检测 BPH 中的共生菌。这些方法容易受到外部干扰,繁琐、耗时费力。微滴数字 PCR(ddPCR)不需要标准曲线,可以实现绝对定量,不依赖于 Cq 值,更有助于分析拷贝数变异、基因突变和相对基因表达。本研究建立并优化了基于 ddPCR 的 BPH YLS 快速检测方法。结果表明,该方法对两种 YLS(共生体和)的检测限分别为 1.3 拷贝/μL 和 1.2 拷贝/μL。样品重复的变异系数小于 5%;因此,本研究中建立的 ddPCR 方法具有良好的灵敏度、特异性和重复性。它可以用于快速准确地检测 BPH 的 YLS。

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Proc Natl Acad Sci U S A. 2023 Jun 6;120(23):e2305007120. doi: 10.1073/pnas.2305007120. Epub 2023 May 31.
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Optimised multiplex droplet digital PCR is more precise, but not more sensitive, than real-time PCR for the detection of allergenic peanut.优化多重液滴数字 PCR 比实时 PCR 更精确,但检测过敏原花生的灵敏度没有提高。
Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2022 Nov;39(11):1797-1805. doi: 10.1080/19440049.2022.2126530. Epub 2022 Sep 30.
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Antibiotic Treatment Reduced the Gut Microbiota Diversity, Prolonged the Larval Development Period and Lessened Adult Fecundity of (Lepidoptera: Tortricidae).
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Insects. 2022 Sep 15;13(9):838. doi: 10.3390/insects13090838.
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Dynamics of gut microflora across the life cycle of Spodoptera frugiperda and its effects on the feeding and growth of larvae.草地贪夜蛾生命周期中肠道微生物群落的动态变化及其对幼虫取食和生长的影响。
Pest Manag Sci. 2023 Jan;79(1):173-182. doi: 10.1002/ps.7186. Epub 2022 Oct 5.
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