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小麦(L.)1-氨基环丙烷-1-羧酸合成酶()基因家族的全基因组分析与鉴定。

Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase () Gene Family in Wheat ( L.).

机构信息

State Key Laboratory of Crop Stress Biology in Arid Areas and College of Agronomy, Northwest A&F University, Xianyang 712100, China.

出版信息

Int J Mol Sci. 2023 Jul 6;24(13):11158. doi: 10.3390/ijms241311158.

Abstract

Ethylene has an important role in regulating plant growth and development as well as responding to adversity stresses. The 1-aminocyclopropane-1-carboxylate synthase (ACS) is the rate-limiting enzyme for ethylene biosynthesis. However, the role of the gene family in wheat has not been examined. In this study, we identified 12 members in wheat. According to their position on the chromosome, we named them -, which were divided into four subfamilies, and members of the same subfamilies had similar gene structures and protein-conserved motifs. Evolutionary analysis showed that fragment replication was the main reason for the expansion of the gene family. The spatiotemporal expression specificity showed that most of the members had the highest expression in roots, and all genes contained W box elements that were related to root development, which suggested that the gene family might play an important role in root development. The results of the gene expression profile analysis under stress showed that members could respond to a variety of stresses. Protein interaction prediction showed that there were four types of proteins that could interact with TaACS. We also obtained the targeting relationship between family members and miRNA. These results provided valuable information for determining the function of the wheat gene, especially under stress.

摘要

乙烯在调节植物生长发育以及响应逆境胁迫方面起着重要作用。1-氨基环丙烷-1-羧酸合酶(ACS)是乙烯生物合成的限速酶。然而,该基因家族在小麦中的作用尚未被研究。在本研究中,我们在小麦中鉴定出了 12 个成员。根据它们在染色体上的位置,我们将它们命名为 - ,它们被分为四个亚家族,同一亚家族的成员具有相似的基因结构和蛋白保守基序。进化分析表明,片段复制是该基因家族扩张的主要原因。时空表达特异性表明,大多数成员在根部的表达最高,并且所有基因都包含与根发育有关的 W 盒元件,这表明该基因家族可能在根发育中发挥重要作用。胁迫下基因表达谱分析的结果表明,有 12 个成员可以响应多种胁迫。蛋白质相互作用预测表明,有四种类型的蛋白质可以与 TaACS 相互作用。我们还获得了 家族成员与 miRNA 之间的靶向关系。这些结果为确定小麦 基因的功能提供了有价值的信息,特别是在胁迫条件下。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c80/10342151/530867951691/ijms-24-11158-g001.jpg

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