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综合基因分析揭示了与纤维化扩张型心肌病相关的内质网应激相关免疫反应。

Integrative analysis of genes reveals endoplasmic reticulum stress-related immune responses involved in dilated cardiomyopathy with fibrosis.

机构信息

Department of Cardiology, Gansu Provincial Hospital, Lanzhou, 730000, P.R., China.

Department of Rheumatology, First Affiliated Hospital of Zhengzhou University Zhengzhou, Henan, 450000, P.R., China.

出版信息

Apoptosis. 2023 Oct;28(9-10):1406-1421. doi: 10.1007/s10495-023-01871-z. Epub 2023 Jul 18.

Abstract

Endoplasmic reticulum (ER) stress has been implicated in the mechanisms underlying the fibrotic process in dilated cardiomyopathy (DCM) and results in disease exacerbation; however, the molecular details of this mechanism remain unclear. Through microarray and bioinformatic analyses, we explored genetic alterations in myocardial fibrosis (MF) and identified potential biomarkers related to ER stress. We integrated two public microarray datasets, including 19 DCM and 16 control samples, and comprehensively analyzed differential expression, biological functions, molecular interactions, and immune infiltration levels. The immune cell signatures suggest that inflammatory immune imbalance may promote MF progression. Both innate and adaptive immunity are involved in MF development, and T-cell subsets account for a considerable proportion of immune infiltration. The immune subtypes were further compared, and 103 differentially expressed ER stress-related genes were identified. These genes were mainly enriched in neuronal apoptosis, protein modification, oxidative stress reaction, glycolysis and gluconeogenesis, and NOD-like receptor signaling pathways. Furthermore, the 15 highest-scoring core genes were identified. Seven hub genes (AK1, ARPC3, GSN, KPNA2, PARP1, PFKL, and PRKC) might participate in immune-related mechanisms. Our results offer a new integrative view of the pathways and interaction networks of ER stress-related genes and provide guidance for developing novel therapeutic strategies for MF.

摘要

内质网(ER)应激在内质网应激在扩张型心肌病(DCM)纤维化过程的机制中起作用,并导致疾病恶化;然而,这种机制的分子细节仍不清楚。通过微阵列和生物信息学分析,我们探讨了心肌纤维化(MF)中的遗传改变,并确定了与 ER 应激相关的潜在生物标志物。我们整合了两个公共微阵列数据集,包括 19 个 DCM 和 16 个对照样本,全面分析了差异表达、生物学功能、分子相互作用和免疫浸润水平。免疫细胞特征表明,炎症免疫失衡可能促进 MF 进展。固有免疫和适应性免疫都参与了 MF 的发展,T 细胞亚群占免疫浸润的相当大比例。进一步比较免疫亚型,确定了 103 个差异表达的与 ER 应激相关的基因。这些基因主要富集在神经元凋亡、蛋白质修饰、氧化应激反应、糖酵解和糖异生以及 NOD 样受体信号通路中。此外,确定了 15 个评分最高的核心基因。七个枢纽基因(AK1、ARPC3、GSN、KPNA2、PARP1、PFKL 和 PRKC)可能参与了免疫相关机制。我们的研究结果为 ER 应激相关基因的途径和相互作用网络提供了新的综合视角,并为开发 MF 的新型治疗策略提供了指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d865/10425499/509eac440687/10495_2023_1871_Fig1_HTML.jpg

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