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基于自监督的数字病理图像解缠技术实现任意域染色转移

Self-Supervised Digital Histopathology Image Disentanglement for Arbitrary Domain Stain Transfer.

出版信息

IEEE Trans Med Imaging. 2023 Dec;42(12):3625-3638. doi: 10.1109/TMI.2023.3298361. Epub 2023 Nov 30.

DOI:10.1109/TMI.2023.3298361
PMID:37486828
Abstract

Diagnosis of cancerous diseases relies on digital histopathology images from stained slides. However, the staining varies among medical centers, which leads to a domain gap of staining. Existing generative adversarial network (GAN) based stain transfer methods highly rely on distinct domains of source and target, and cannot handle unseen domains. To overcome these obstacles, we propose a self-supervised disentanglement network (SDN) for domain-independent optimization and arbitrary domain stain transfer. SDN decomposes an image into features of content and stain. By exchanging the stain features, the staining style of an image is transferred to the target domain. For optimization, we propose a novel self-supervised learning policy based on the consistency of stain and content among augmentations from one instance. Therefore, the process of training SDN is independent on the domain of training data, and thus SDN is able to tackle unseen domains. Exhaustive experiments demonstrate that SDN achieves the top performance in intra-dataset and cross-dataset stain transfer compared with the state-of-the-art stain transfer models, while the number of parameters in SDN is three orders of magnitude smaller parameters than that of compared models. Through stain transfer, SDN improves AUC of downstream classification model on unseen data without fine-tuning. Therefore, the proposed disentanglement framework and self-supervised learning policy have significant advantages in eliminating the stain gap among multi-center histopathology images.

摘要

癌症疾病的诊断依赖于染色载玻片的数字组织病理学图像。然而,不同医疗中心的染色存在差异,这导致了染色的领域差距。现有的基于生成对抗网络(GAN)的染色转移方法高度依赖于源域和目标域的不同,并且无法处理未见过的域。为了克服这些障碍,我们提出了一种用于独立于域的优化和任意域染色转移的自监督解缠网络(SDN)。SDN 将图像分解为内容和染色特征。通过交换染色特征,可以将图像的染色风格转移到目标域。为了优化,我们提出了一种基于从一个实例的增强之间的染色和内容一致性的新的自监督学习策略。因此,SDN 的训练过程不依赖于训练数据的域,因此 SDN 能够处理未见过的域。详尽的实验表明,与最先进的染色转移模型相比,SDN 在数据集内和跨数据集的染色转移方面实现了最佳性能,而 SDN 的参数数量比比较模型小三个数量级。通过染色转移,SDN 可以在不进行微调的情况下提高下游分类模型在未见数据上的 AUC。因此,所提出的解缠框架和自监督学习策略在消除多中心组织病理学图像之间的染色差距方面具有显著优势。

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引用本文的文献

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Stain Normalization of Histopathological Images Based on Deep Learning: A Review.基于深度学习的组织病理学图像染色归一化:综述
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