Zankov Dmitry, Madzhidov Timur, Baskin Igor, Varnek Alexandre
Laboratory of Chemoinformatics, University of Strasbourg, France.
Chemistry Solutions, Elsevier Ltd, Oxford, OX5 1GB, United Kingdom.
Mol Inform. 2023 Oct;42(10):e2200275. doi: 10.1002/minf.202200275. Epub 2023 Aug 21.
Conjugated QSPR models for reactions integrate fundamental chemical laws expressed by mathematical equations with machine learning algorithms. Herein we present a methodology for building conjugated QSPR models integrated with the Arrhenius equation. Conjugated QSPR models were used to predict kinetic characteristics of cycloaddition reactions related by the Arrhenius equation: rate constant , pre-exponential factor , and activation energy . They were benchmarked against single-task (individual and equation-based models) and multi-task models. In individual models, all characteristics were modeled separately, while in multi-task models , and were treated cooperatively. An equation-based model assessed using the Arrhenius equation and and values predicted by individual models. It has been demonstrated that the conjugated QSPR models can accurately predict the reaction rate constants at extreme temperatures, at which reaction rate constants hardly can be measured experimentally. Also, in the case of small training sets conjugated models are more robust than related single-task approaches.
用于反应的共轭定量构效关系(QSPR)模型将数学方程所表达的基本化学定律与机器学习算法相结合。在此,我们提出一种构建与阿伦尼乌斯方程相结合的共轭QSPR模型的方法。共轭QSPR模型用于预测由阿伦尼乌斯方程相关联的环加成反应的动力学特征:速率常数、指前因子和活化能。它们与单任务(基于个体和基于方程的模型)和多任务模型进行了基准测试。在个体模型中,所有特征分别建模,而在多任务模型中,、和协同处理。基于方程的模型使用阿伦尼乌斯方程以及个体模型预测的和值来评估。结果表明,共轭QSPR模型能够准确预测极端温度下的反应速率常数,而在这些极端温度下,反应速率常数很难通过实验测量。此外,在小训练集的情况下,共轭模型比相关的单任务方法更稳健。