Lu Huibin, Chen Li, Kong Lingyang, Huang Linpei, Chen Guangjie
Yunnan Key Laboratory of Plateau Geographical Process and Environmental Changes, Faculty of Geography, Yunnan Normal University, Kunming 650500, PR China.
Int J Syst Evol Microbiol. 2023 Jul;73(7). doi: 10.1099/ijsem.0.005974.
Three Gram-stain-negative, aerobic, rod-shaped, stalked and motile strains with a polar flagellum (BYS171W, DXS10W and LKC15W) were isolated from streams in PR China. Comparisons based on 16S rRNA gene sequences showed that strains BYS171W and DXS10W had the highest 16S rRNA gene sequence similarities (98.1 and 98.6 %, respectively) to CB 48, and strain LKC15W showed 99.6 % similarity to ZFGT-14. These three strains showed 16S rRNA gene sequence similarities of less than 96.9 % to other species of the genus . A phylogenetic tree reconstructed based on 16S rRNA gene sequences also showed that strains BYS171W and DXS10W took CB 48 as their closest neighbour, and strain LKC15W formed a tight cluster with ZFGT-14. The phylogenomic tree also showed that these three strains belong to the genus and form a distinct clade with the species of the genus . The major cellular fatty acids of these three strains were summed feature 3 (C 7 and/or C 6), summed feature 8 (C 7 and/or C 6), C and 11-methyl C 7. Their polar lipids mainly consisted of phosphatidylglycerol, unidentified glycolipids and nitrogen-containing phosphoglycolipids. The calculated OrthoANIu and digital DNA-DNA hybridization values among strains BYS171W, DXS10W, LKC15W and other related strains were less than 87.2 % and 34.0 %, respectively, indicating that these three strains should represent three independent novel species of the genus , for which the names sp. nov. (type strain BYS171W=GDMCC 1.3226=KCTC 92612), sp. nov. (type strain DXS10W=GDMCC 1.3224=KCTC 92543) and sp. nov. (type strain LKC15W=GDMCC 1.3225=KCTC 92544) are proposed.
从中国PR的溪流中分离出三株革兰氏阴性、需氧、杆状、有柄且具极生鞭毛的菌株(BYS171W、DXS10W和LKC15W)。基于16S rRNA基因序列的比较表明,菌株BYS171W和DXS10W与CB 48的16S rRNA基因序列相似度最高(分别为98.1%和98.6%),菌株LKC15W与ZFGT - 14的相似度为99.6%。这三株菌株与该属的其他物种的16S rRNA基因序列相似度均低于96.9%。基于16S rRNA基因序列重建的系统发育树也表明,菌株BYS171W和DXS10W以CB 48为其最亲近的邻居,菌株LKC15W与ZFGT - 14形成紧密的簇。全基因组系统发育树还表明,这三株菌株属于该属,并与该属的其他物种形成一个独特的进化枝。这三株菌株的主要细胞脂肪酸为总和特征3(C 7和/或C 6)、总和特征8(C 7和/或C 6)、C和11 - 甲基C 7。它们的极性脂质主要由磷脂酰甘油、未鉴定的糖脂和含氮磷酸糖脂组成。菌株BYS171W、DXS10W、LKC15W与其他相关菌株之间计算得到的OrthoANIu值和数字DNA - DNA杂交值分别低于87.2%和34.0%,表明这三株菌株应代表该属的三个独立新物种,为此提出新物种名称sp. nov.(模式菌株BYS171W = GDMCC 1.3226 = KCTC 92612)、sp. nov.(模式菌株DXS10W = GDMCC 1.3224 = KCTC 92543)和sp. nov.(模式菌株LKC15W = GDMCC 1.3225 = KCTC 92544)。