Aoun Andrew, Shetler Oliver, Raghuraman Radha, Rodriguez Gustavo A, Hussaini S Abid
Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University Medical Center, New York, NY 10032, USA.
Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY 10032, USA.
bioRxiv. 2023 Nov 16:2023.07.11.548592. doi: 10.1101/2023.07.11.548592.
Spatial representations in the entorhinal cortex (EC) and hippocampus (HPC) are fundamental to cognitive functions like navigation and memory. These representations, embodied in spatial field maps, dynamically remap in response to environmental changes. However, current methods, such as Pearson's correlation coefficient, struggle to capture the complexity of these remapping events, especially when fields do not overlap, or transformations are non-linear. This limitation hinders our understanding and quantification of remapping, a key aspect of spatial memory function. To address this, we propose a family of metrics based on the Earth Mover's Distance (EMD) as a versatile framework for characterizing remapping. Applied to both normalized and unnormalized distributions, the EMD provides a granular, noise-resistant, and rate-robust description of remapping. This approach enables the identification of specific cell types and the characterization of remapping in various scenarios, including disease models. Furthermore, the EMD's properties can be manipulated to identify spatially tuned cell types and to explore remapping as it relates to alternate information forms such as spatiotemporal coding. By employing approximations of the EMD, we present a feasible, lightweight approach that complements traditional methods. Our findings underscore the potential of the EMD as a powerful tool for enhancing our understanding of remapping in the brain and its implications for spatial navigation, memory studies and beyond.
内嗅皮层(EC)和海马体(HPC)中的空间表征对于诸如导航和记忆等认知功能至关重要。这些表征体现在空间场图中,会随着环境变化而动态重映射。然而,当前的方法,如皮尔逊相关系数,难以捕捉这些重映射事件的复杂性,尤其是当场不重叠或变换是非线性时。这种局限性阻碍了我们对重映射的理解和量化,而重映射是空间记忆功能的一个关键方面。为了解决这个问题,我们提出了一族基于推土机距离(EMD)的度量,作为表征重映射的通用框架。应用于归一化和未归一化分布时,EMD提供了一种粒度精细、抗噪声且速率稳健的重映射描述。这种方法能够识别特定的细胞类型,并在包括疾病模型在内的各种场景中表征重映射。此外,可以操纵EMD的属性来识别空间调谐的细胞类型,并探索与时空编码等替代信息形式相关的重映射。通过采用EMD的近似值,我们提出了一种可行的、轻量级的方法,对传统方法起到补充作用。我们的研究结果强调了EMD作为一种强大工具的潜力,有助于增强我们对大脑中重映射的理解及其对空间导航、记忆研究及其他方面的影响。