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进化与发育动力学的变分综合

A Variational Synthesis of Evolutionary and Developmental Dynamics.

作者信息

Friston Karl, Friedman Daniel A, Constant Axel, Knight V Bleu, Fields Chris, Parr Thomas, Campbell John O

机构信息

Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1E 6AP, UK.

Department of Entomology and Nematology, University of California, Davis, Davis, CA 95616, USA.

出版信息

Entropy (Basel). 2023 Jun 21;25(7):964. doi: 10.3390/e25070964.

Abstract

This paper introduces a variational formulation of natural selection, paying special attention to the nature of 'things' and the way that different 'kinds' of 'things' are individuated from-and influence-each other. We use the Bayesian mechanics of particular partitions to understand how slow phylogenetic processes constrain-and are constrained by-fast, phenotypic processes. The main result is a formulation of adaptive fitness as a path integral of phenotypic fitness. Paths of least action, at the phenotypic and phylogenetic scales, can then be read as inference and learning processes, respectively. In this view, a phenotype actively infers the state of its econiche under a generative model, whose parameters are learned via natural (Bayesian model) selection. The ensuing variational synthesis features some unexpected aspects. Perhaps the most notable is that it is not possible to describe or model a population of conspecifics per se. Rather, it is necessary to consider populations of distinct natural kinds that influence each other. This paper is limited to a description of the mathematical apparatus and accompanying ideas. Subsequent work will use these methods for simulations and numerical analyses-and identify points of contact with related mathematical formulations of evolution.

摘要

本文介绍了自然选择的一种变分形式,特别关注“事物”的本质以及不同“种类”的“事物”如何相互区分并相互影响。我们使用特定划分的贝叶斯力学来理解缓慢的系统发育过程如何限制快速的表型过程以及如何受到其制约。主要结果是将适应性适应度表述为表型适应度的路径积分。然后,在表型和系统发育尺度上,最小作用量路径可分别解读为推理和学习过程。按照这种观点,一个表型在一个生成模型下主动推断其生态位的状态,该模型的参数通过自然(贝叶斯模型)选择来学习。由此产生的变分综合具有一些意想不到的方面。也许最值得注意的是,不可能单独描述或建模一个同种生物的种群。相反,有必要考虑相互影响的不同自然种类的种群。本文仅限于对数学工具及相关思想的描述。后续工作将使用这些方法进行模拟和数值分析,并确定与进化相关数学公式的联系点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e26f/10378262/9fa34bb635bd/entropy-25-00964-g003.jpg

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