Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.
Institute for Systems Biology, Seattle, WA 98109, USA.
Genes (Basel). 2023 Jul 13;14(7):1436. doi: 10.3390/genes14071436.
Platy-1 retroposons are short interspersed elements (SINEs) unique to platyrrhine primates. Discovered in the common marmoset () genome in 2016, these 100 bp mobile element insertions (MEIs) appeared to be novel drivers of platyrrhine evolution, with over 2200 full-length members across 62 different subfamilies, and strong evidence of ongoing proliferation in . Subsequent characterization of Platy-1 elements in , and genera, suggested that the widespread mobilization detected in marmoset (family Callithrichidae) was perhaps an anomaly. Two additional Callithrichidae genomes are now available, a scaffold level genome assembly for (tamarin; SagImp_v1) and a chromosome-level assembly for (Midas tamarin; ASM2_v1). Here, we report that each tamarin genome contains over 11,000 full-length Platy-1 insertions, about 1150 are shared by both tamarins, 7511 are unique to , and another 8187 are unique to . Roughly 325 are shared among the three callithrichids. We identified six new Platy-1 subfamilies derived from Platy-1-8, with the youngest new subfamily, Platy-1-8c_, being the primary source of the amplification burst. This constitutes the largest expansion of Platy-1 MEIs reported to date and the most extensive independent SINE amplification between two closely related species.
盘状 1 反转录转座子是阔鼻猴类特有的短散在元件(SINEs)。2016 年在普通狨猴基因组中发现,这些 100bp 的移动元件插入(MEIs)似乎是阔鼻猴进化的新驱动因素,在 62 个不同的亚科中有超过 2200 个全长成员,并且在 中具有强烈的增殖证据。随后对 、 和 属中的 Platy-1 元件进行了特征描述,表明在狨猴(Callithrichidae 科)中检测到的广泛动员可能是一个异常现象。现在有两个额外的 Callithrichidae 基因组可用,一个是狨猴(tamarin;SagImp_v1)的支架水平基因组组装,另一个是 Midas tamarin 的染色体水平组装(ASM2_v1)。在这里,我们报告说,每个狨猴基因组都包含超过 11000 个全长的 Platy-1 插入,大约有 1150 个是 和 共有,7511 个是 特有的,另外 8187 个是 特有的。大约 325 个在三种狨猴中共有。我们鉴定了六个源自 Platy-1-8 的新 Platy-1 亚科,其中最年轻的新亚科 Platy-1-8c_,是 扩增爆发的主要来源。这是迄今为止报道的 Platy-1 MEIs 最大的扩张,也是两个密切相关的物种之间最广泛的独立 SINE 扩增。