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通过多组学分析解析甜荞响应镉胁迫的养分代谢途径及关键候选基因。

Nutrient Metabolism Pathways Analysis and Key Candidate Genes Identification Corresponding to Cadmium Stress in Buckwheat through Multiomics Analysis.

机构信息

School of Life Science and Technology, Wuhan Polytechnic University, Wuhan 430023, China.

出版信息

Genes (Basel). 2023 Jul 18;14(7):1462. doi: 10.3390/genes14071462.

DOI:10.3390/genes14071462
PMID:37510366
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10378796/
Abstract

(L.) Gaertn (buckwheat) can be used both as medicine and food and is also an important food crop in barren areas and has great economic value. Exploring the molecular mechanisms of the response to cadmium (Cd) stress can provide the theoretical reference for improving the buckwheat yield and quality. In this study, perennial tartary buckwheat DK19 was used as the experimental material, its key metabolic pathways in the response to Cd stress were identified and verified through transcriptomic and metabolomic data analysis. In this investigation, 1798 metabolites were identified through non-targeted metabolomic analysis containing 1091 up-regulated and 984down-regulated metabolites after treatment. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of differential metabolites was significantly enriched in galactose metabolism, glycerol metabolism, phenylpropane biosynthesis, glutathione metabolism, starch and sucrose metabolism. Linkage analysis detected 11 differentially expressed genes (DEGs) in the galactose metabolism pathway, 8 candidate DEGs in the lipid metabolism pathway, and 20 candidate DEGs in the glutathione metabolism pathway. The results of our study provided useful clues for genetically improving the resistance to cadmium by analyzing the molecular mechanism of cadmium tolerance in buckwheat.

摘要

(L.)Gaertn(荞麦)既可用作药物又可用作食物,也是贫瘠地区的重要粮食作物,具有巨大的经济价值。探索对镉(Cd)胁迫的反应的分子机制可为提高荞麦产量和质量提供理论参考。本研究以多年生苦荞 DK19 为实验材料,通过转录组和代谢组数据分析,鉴定和验证了其对 Cd 胁迫反应的关键代谢途径。在这项研究中,通过非靶向代谢组分析鉴定出 1798 种代谢物,其中处理后有 1091 种上调和 984 种下调代谢物。差异代谢物的京都基因与基因组百科全书(KEGG)分析显著富集于半乳糖代谢、甘油代谢、苯丙烷生物合成、谷胱甘肽代谢、淀粉和蔗糖代谢。连锁分析检测到半乳糖代谢途径中有 11 个差异表达基因(DEGs),脂质代谢途径中有 8 个候选 DEGs,谷胱甘肽代谢途径中有 20 个候选 DEGs。本研究通过分析荞麦耐镉的分子机制,为通过基因改良提高其对镉的抗性提供了有用的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bc4/10378796/05151ef81fa1/genes-14-01462-g007.jpg
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