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海洋细菌中具有双重辅酶特异性的异柠檬酸脱氢酶的酶学特性分析

Enzymatic Characterization of the Isocitrate Dehydrogenase with Dual Coenzyme Specificity from the Marine Bacterium .

机构信息

Anhui Provincial Key Laboratory of Molecular Enzymology and Mechanism of Major Diseases, Key Laboratory of Biomedicine in Gene Diseases and Health of Anhui Higher Education Institutes, Anhui Normal University, Wuhu 241000, China.

出版信息

Int J Mol Sci. 2023 Jul 13;24(14):11428. doi: 10.3390/ijms241411428.

Abstract

Isocitrate dehydrogenase (IDH) can be divided into NAD-dependent and NADP-dependent types based on the coenzyme specificity. It is worth noting that some IDHs exhibit dual coenzyme specificity characteristics. Herein, a dual coenzyme-dependent IDH from (UmIDH) was expressed, purified, and identified in detail for the first time. SDS-PAGE and Gel filtration chromatography analyses showed that UmIDH is an 84.7 kDa homodimer in solution. The values for NAD and NADP are 1800.0 ± 64.4 μM and 1167.7 ± 113.0 μM in the presence of Mn, respectively. Meanwhile, the catalytic efficiency (/) of UmIDH is only 2.3-fold greater for NADP than NAD. The maximal activity for UmIDH occurred at pH 8.5 (with Mn) or pH 8.7 (with Mg) and at 35 °C (with Mn or Mg). Heat inactivation assay revealed that UmIDH sustained 50% of maximal activity after incubation at 57 °C for 20 min with either Mn or Mg. Moreover, three putative core coenzyme binding residues (R345, L346, and V352) of UmIDH were evaluated by site-directed mutagenesis. This recent work identified a unique dual coenzyme-dependent IDH and achieved the groundbreaking bidirectional modification of this specific IDH's coenzyme dependence for the first time. This provides not only a reference for the study of dual coenzyme-dependent IDH, but also a basis for the investigation of the coenzyme-specific evolutionary mechanisms of IDH.

摘要

异柠檬酸脱氢酶(IDH)可以根据辅酶特异性分为 NAD 依赖性和 NADP 依赖性两种类型。值得注意的是,一些 IDH 表现出双重辅酶特异性特征。在此,首次详细表达、纯化和鉴定了来自 (UmIDH)的双重辅酶依赖性 IDH。SDS-PAGE 和凝胶过滤色谱分析表明,UmIDH 在溶液中是一个 84.7 kDa 的同源二聚体。在 Mn 存在下,NAD 和 NADP 的 值分别为 1800.0 ± 64.4 μM 和 1167.7 ± 113.0 μM。同时,UmIDH 对 NADP 的催化效率(/)仅比 NAD 高 2.3 倍。UmIDH 的最大活性出现在 pH 8.5(Mn)或 pH 8.7(Mg)和 35°C(Mn 或 Mg)。热失活动力学实验表明,UmIDH 在 Mn 或 Mg 存在下,在 57°C 孵育 20 分钟后,仍保持 50%的最大活性。此外,通过定点突变评估了 UmIDH 的三个假定的核心辅酶结合残基(R345、L346 和 V352)。这项最近的工作鉴定了一种独特的双重辅酶依赖性 IDH,并首次实现了对该特定 IDH 的辅酶依赖性的双向修饰。这不仅为双重辅酶依赖性 IDH 的研究提供了参考,也为 IDH 的辅酶特异性进化机制的研究提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2961/10380307/638e5259e8d7/ijms-24-11428-g001.jpg

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