• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

雷氏长尾须鳗(Gymnothorax reevesii)染色体水平参考基因组组装。

A chromosome-level reference genome assembly of the Reeve's moray eel (Gymnothorax reevesii).

机构信息

College of Animal Science and Technology, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.

Guangdong Provincial Water Environment and Aquatic Products Security Engineering Technology Research Center, Guangzhou, 510225, China.

出版信息

Sci Data. 2023 Jul 29;10(1):501. doi: 10.1038/s41597-023-02394-7.

DOI:10.1038/s41597-023-02394-7
PMID:37516767
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10387071/
Abstract

Due to potentially hostile behaviors and elusive habitats, moray eels (Muraenidae) as one group of apex predators in coral reefs all across the globe have not been well investigated. Here, we constructed a chromosome-level genome assembly for the representative Reeve's moray eel (Gymnothorax reevesii). This haplotype genome assembly is 2.17 Gb in length, and 97.87% of the sequences are anchored into 21 chromosomes. It contains 56.34% repetitive sequences and 23,812 protein-coding genes, of which 96.77% are functionally annotated. This sequenced marine species in Anguilliformes makes a good complement to the genetic resource of eel genomes. It not only provides a genetic resource for in-depth studies of the Reeve's moray eel, but also enables deep-going genomic comparisons among various eels.

摘要

由于可能存在敌对行为和难以捉摸的栖息地,海鳝(Muraenidae)作为全球珊瑚礁中的顶级掠食者之一,尚未得到充分研究。在这里,我们为具有代表性的波纹裸胸鳝(Gymnothorax reevesii)构建了染色体水平的基因组组装。这个单倍型基因组组装的长度为 2.17 Gb,序列中有 97.87%锚定在 21 条染色体上。它包含 56.34%的重复序列和 23,812 个蛋白质编码基因,其中 96.77%具有功能注释。这种在鳗鲡目中测序的海洋物种是鳗鲡基因组遗传资源的很好补充。它不仅为深入研究波纹裸胸鳝提供了遗传资源,还使各种鳗鱼之间能够进行深入的基因组比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/5f0837eb2837/41597_2023_2394_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/c19d09e7ec62/41597_2023_2394_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/57c141ce1c0a/41597_2023_2394_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/1fb9dc59b024/41597_2023_2394_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/c715b65d7f98/41597_2023_2394_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/b77de37fec48/41597_2023_2394_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/5f0837eb2837/41597_2023_2394_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/c19d09e7ec62/41597_2023_2394_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/57c141ce1c0a/41597_2023_2394_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/1fb9dc59b024/41597_2023_2394_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/c715b65d7f98/41597_2023_2394_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/b77de37fec48/41597_2023_2394_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7837/10387071/5f0837eb2837/41597_2023_2394_Fig6_HTML.jpg

相似文献

1
A chromosome-level reference genome assembly of the Reeve's moray eel (Gymnothorax reevesii).雷氏长尾须鳗(Gymnothorax reevesii)染色体水平参考基因组组装。
Sci Data. 2023 Jul 29;10(1):501. doi: 10.1038/s41597-023-02394-7.
2
Complete mitogenome of two moray eels of Gymnothorax formosus and Scuticaria tigrina (Anguilliformes: Muraenidae).波纹裸胸鳝和豹纹副花鮨(鳗鲡目:海鳝科)两种海鳝的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2651-2. doi: 10.3109/19401736.2015.1043530. Epub 2015 Jun 1.
3
Next-generation sequencing yields the complete mitochondrial genome of the longfang moray, Enchelynassa canina (Anguilliformes: Muraenidae).新一代测序技术获得了犬牙长吻海鳝(鳗鲡目:海鳝科)的完整线粒体基因组。
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2431-2. doi: 10.3109/19401736.2015.1030629. Epub 2015 May 27.
4
Next generation sequencing yields the complete mitochondrial genome of the Zebra moray, Gymnomuraena zebra (Anguilliformes: Muraenidae).下一代测序技术获得了斑马海鳝(Gymnomuraena zebra)的完整线粒体基因组,斑马海鳝属于鳗鲡目海鳝科。
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4230-4231. doi: 10.3109/19401736.2015.1022754. Epub 2015 May 22.
5
Identification of two new repetitive elements and chromosomal mapping of repetitive DNA sequences in the fish Gymnothorax unicolor (Anguilliformes: Muraenidae).鉴定两种新的重复元件,并对鱼类 Gymnothorax unicolor(鳗鲡目:鳗鲡科)中的重复 DNA 序列进行染色体定位。
Eur J Histochem. 2011 May 27;55(2):e12. doi: 10.4081/ejh.2011.e12.
6
Phylogeny of moray eels (Anguilliformes: Muraenidae), with a revised classification of true eels (Teleostei: Elopomorpha: Anguilliformes).海鳝(鳗鲡目:海鳝科)的系统发育,以及真鳗(硬骨鱼纲:鳗鲡总目:鳗鲡目)的修订分类。
Mitochondrial DNA. 2013 Feb;24(1):55-66. doi: 10.3109/19401736.2012.710226. Epub 2012 Sep 12.
7
A new species of white-spotted moray eel, Gymnothorax smithi (Muraenidae: Muraeninae) from deep waters of Arabian Sea, India.一种来自印度阿拉伯海深水区的新物种——史密斯氏裸胸鳝(Gymnothorax smithi,海鳝科:裸胸鳝亚科)。
Zootaxa. 2019 Aug 8;4652(2):zootaxa.4652.2.8. doi: 10.11646/zootaxa.4652.2.8.
8
Comparative cytogenetics of six Indo-Pacific moray eels (Anguilliformes: Muraenidae) by chromosomal banding and fluorescence in situ hybridization.通过染色体显带和荧光原位杂交对六种印度-太平洋海鳝(鳗鲡目:海鳝科)进行比较细胞遗传学研究。
J Fish Biol. 2015 Sep;87(3):634-45. doi: 10.1111/jfb.12737. Epub 2015 Aug 4.
9
A new species of Short Brown Unpatterned Moray Eel of the Genus Gymnothorax (Anguilliformes: Muraenidae) from the Bay of Bengal.来自孟加拉湾的裸胸鳝属(鳗鲡目:海鳝科)短棕无纹海鳝新物种。
Zootaxa. 2015 Oct 1;4027(1):140-4. doi: 10.11646/zootaxa.4027.1.8.
10
Gymnothorax poikilospilus, a new moray eel (Teleostei: Anguilliformes: Muraenidae) from Penghu Islands, western Taiwan.台湾西部澎湖群岛的一种新海鳝——杂斑裸胸鳝(硬骨鱼纲:鳗鲡目:海鳝科)
Zootaxa. 2022 Sep 23;5189(1):87-102. doi: 10.11646/zootaxa.5189.1.11.

引用本文的文献

1
A complete telomere-to-telomere chromosome-level genome assembly of X-ray tetra (Pristella maxillaris).X射线脂鲤(Pristella maxillaris)的端粒到端粒的染色体水平全基因组组装
Sci Data. 2025 Mar 24;12(1):496. doi: 10.1038/s41597-025-04824-0.
2
Chromosome-level genome assembly and annotation of pawak croaker (Pennahia pawak).爪哇笛鲷(Pennahia pawak)的染色体水平基因组组装与注释
Sci Data. 2025 Mar 10;12(1):412. doi: 10.1038/s41597-025-04745-y.
3
Chromosome-level genome assemblies of vulnerable male and female elongate loach (Leptobotia elongata).

本文引用的文献

1
A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization.日本鳗鲡基因组的染色体水平组装,基因复制和染色体重排的研究。
Gigascience. 2022 Dec 8;11. doi: 10.1093/gigascience/giac120.
2
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.Gfastats:使用组装图转换、评估和操作基因组序列。
Bioinformatics. 2022 Sep 2;38(17):4214-4216. doi: 10.1093/bioinformatics/btac460.
3
A descriptive and comparative neurocranium morphology of Anguilliformes fishes in Taiwan waters.
脆弱长薄鳅(Leptobotia elongata)雌雄两性染色体水平基因组组装。
Sci Data. 2024 Aug 24;11(1):924. doi: 10.1038/s41597-024-03789-w.
4
Chromosome-level genome assembly and annotation of eel goby (Odontamblyopus rebecca).鳗鲡(Odontamblyopus rebecca)染色体水平基因组组装和注释。
Sci Data. 2024 Feb 2;11(1):160. doi: 10.1038/s41597-024-02997-8.
台湾水域鳗鲡目鱼类的描述性和比较性脑颅形态。
Zootaxa. 2021 Aug 20;5023(4):509-536. doi: 10.11646/zootaxa.5023.4.3.
4
: drawing SVG graphics to visualize and map genome-wide data on the idiograms.绘制SVG图形以可视化并在染色体模式图上绘制全基因组数据。
PeerJ Comput Sci. 2020 Jan 20;6:e251. doi: 10.7717/peerj-cs.251. eCollection 2020.
5
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.使用带有 hifiasm 的相定装配图进行单体型解析从头组装。
Nat Methods. 2021 Feb;18(2):170-175. doi: 10.1038/s41592-020-01056-5. Epub 2021 Feb 1.
6
Vertebrate Chromosome Evolution.脊椎动物染色体进化。
Annu Rev Anim Biosci. 2021 Feb 16;9:1-27. doi: 10.1146/annurev-animal-020518-114924. Epub 2020 Nov 13.
7
Ecology and evolution of migration in the freshwater eels of the genus Schrank, 1798.1798年施兰克属淡水鳗迁移的生态学与进化
Heliyon. 2020 Oct 6;6(10):e05176. doi: 10.1016/j.heliyon.2020.e05176. eCollection 2020 Oct.
8
Descriptions of neurocranium morphology in 34 species of moray eels (Muraenidae) found in Taiwan.台湾发现的34种海鳝(海鳝科)的脑颅形态描述。
Zootaxa. 2020 Jul 9;4810(1):zootaxa.4810.1.4. doi: 10.11646/zootaxa.4810.1.4.
9
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.Merqury:基因组组装的无参考质量、完整性和相位评估。
Genome Biol. 2020 Sep 14;21(1):245. doi: 10.1186/s13059-020-02134-9.
10
Review of the moray eels (Anguilliformes: Muraenidae) of the Red Sea, with description of a new species.红海海鳝(鳗鲡目:海鳝科)综述及一新物种描述
Zootaxa. 2019 Dec 5;4704(1):zootaxa.4704.1.1. doi: 10.11646/zootaxa.4704.1.1.