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sp. nov.,一种从大西洋分离得到的新型海洋细菌。

sp. nov., a novel marine bacterium isolated from the Atlantic Ocean.

机构信息

Group of Climate, Meteorology and Global Change, IITAA- Institute of Agricultural and Environmental Research and Technology, University of the Azores, Angra do Heroísmo, Azores, Portugal.

Group of Food Science and Health, IITAA- Institute of Agricultural and Environmental Research and Technology, University of the Azores, Angra do Heroísmo, Azores, Portugal.

出版信息

Int J Syst Evol Microbiol. 2023 Aug;73(8). doi: 10.1099/ijsem.0.005959.

Abstract

A bacterial strain, PhyBa_CO2_2, was isolated from the North Atlantic Gyre, offshore Terceira Island in the Azores. Initially, the NCBI nucleotide blast analysis based on 16S rRNA gene sequences revealed that the strain belongs to the genus , with a 100 % identity with LMG 19861. However, further genomic characterization through average nucleotide identity (ANI) and digital DNA-DNA hybridization analyses showed values of 96.06 and 64.80 %, respectively. Comparative genomics also highlighted differences in gene content. The genome size of PhyBa_CO2_2 is 3.6 Mbp and the DNA G+C content is 72.1 mol%. Chemotaxonomic analysis demonstrated that the composition of the fatty acids was mainly composed of anteiso-C (46.04 %), iso-C (13.70 %) and anteiso-C (9.48 %), and the polar lipids were mainly diphosphatidylglycerol, phosphatidylglycerol and two unidentified glycolipids. Furthermore, the diagnostic amino acid of the cell wall was -diaminopimelic acid and the predominant menaquinone was MK7. Finally, phenotypic analysis revealed differences in biochemical profiles between PhyBa_CO2_2 and its closely related strains in terms of indole production, urease and β-glucuronidase activity. Therefore, based on the genomic, chemotaxonomic and phenotypic data obtained, we concluded that strain PhyBa_CO2_2 represents a new species, for which the name sp. nov. is proposed in reference to its isolation site. The type strain is PhyBa_CO2_2 (=DSM 114113= CECT 30695).

摘要

一株细菌菌株 PhyBa_CO2_2 从北大西洋 Gyre 中分离得到,位于亚速尔群岛特塞拉岛近海处。最初,基于 16S rRNA 基因序列的 NCBI 核苷酸比对分析表明,该菌株属于 属,与 LMG 19861 的同源性为 100%。然而,通过平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交分析的进一步基因组特征分析显示,分别为 96.06%和 64.80%。比较基因组学也突出了基因内容的差异。PhyBa_CO2_2 的基因组大小为 3.6 Mbp,DNA G+C 含量为 72.1 mol%。化学生态分析表明,脂肪酸的组成主要由 anteiso-C(46.04%)、iso-C(13.70%)和 anteiso-C(9.48%)组成,极性脂主要由二磷脂酰甘油、磷脂酰甘油和两种未鉴定的糖脂组成。此外,细胞壁的诊断氨基酸为 -二氨基庚二酸,主要的menaquinone 为 MK7。最后,表型分析表明,PhyBa_CO2_2 与与其密切相关的菌株在吲哚产生、脲酶和 β-葡萄糖醛酸酶活性方面的生化特征存在差异。因此,基于获得的基因组、化学生态和表型数据,我们得出结论,菌株 PhyBa_CO2_2 代表一个新的物种,建议以其分离地点命名为 sp. nov.。模式菌株为 PhyBa_CO2_2(=DSM 114113=C ECT 30695)。

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