Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, Iran.
RUBAM, Institute for Advanced Chemistry (IQAC-CSIC), Jordi Girona 18-26, 08034, Barcelona, Spain.
Metabolomics. 2023 Aug 7;19(8):70. doi: 10.1007/s11306-023-02030-w.
This study has investigated the temporal disruptive effects of tributyltin (TBT) on lipid homeostasis in Daphnia magna. To achieve this, the study used Liquid Chromatography-Mass Spectrometry (LC-MS) analysis to analyze biological samples of Daphnia magna treated with TBT over time. The resulting data sets were multivariate and three-way, and were modeled using bilinear and trilinear non-negative factor decomposition chemometric methods. These methods allowed for the identification of specific patterns in the data and provided insight into the effects of TBT on lipid homeostasis in Daphnia magna.
Investigation of how are the changes in the lipid concentrations of Daphnia magna pools when they were exposed with TBT and over time using non-targeted LC-MS and advanced chemometric analysis.
The simultaneous analysis of LC-MS data sets of Daphnia magna samples under different experimental conditions (TBT dose and time) were analyzed using the ROIMCR method, which allows the resolution of the elution and mass spectra profiles of a large number of endogenous lipids. Changes obtained in the peak areas of the elution profiles of these lipids caused by the dose of TBT treatment and the time after its exposure are analyzed by principal component analysis, multivariate curve resolution-alternative least square, two-way ANOVA and ANOVA-simultaneous component analysis.
87 lipids were identified. Some of these lipids are proposed as Daphnia magna lipidomic biomarkers of the effects produced by the two considered factors (time and dose) and by their interaction. A reproducible multiplicative effect between these two factors is confirmed and the optimal approach to model this dataset resulted to be the application of the trilinear factor decomposition model.
The proposed non-targeted LC-MS lipidomics approach resulted to be a powerful tool to investigate the effects of the two factors on the Daphnia magna lipidome using chemometric methods based on bilinear and trilinear factor decomposition models, according to the type of interaction between the design factors.
本研究调查了三丁基锡(TBT)对大型溞体内脂质稳态的时间干扰效应。为此,该研究使用液相色谱-质谱联用(LC-MS)分析,分析了随时间推移用 TBT 处理的大型溞生物样本。得到的数据集是多元的和三向的,并用双线性和三线性非负因子分解化学计量方法进行建模。这些方法允许识别数据中的特定模式,并深入了解 TBT 对大型溞体内脂质稳态的影响。
使用非靶向 LC-MS 和先进的化学计量分析方法,研究大型溞体内脂质池浓度随时间变化的情况,以及暴露于 TBT 时的变化。
使用 ROIMCR 方法分析不同实验条件(TBT 剂量和时间)下大型溞样本的 LC-MS 数据集,该方法允许解析大量内源性脂质的洗脱和质谱谱图。通过主成分分析、多元曲线分辨-交替最小二乘法、双向方差分析和方差-同时成分分析,分析 TBT 处理剂量和暴露后时间引起的这些脂质洗脱谱峰面积变化。
鉴定出 87 种脂质。其中一些脂质被提议作为大型溞脂质组学生物标志物,用于研究这两个考虑因素(时间和剂量)及其相互作用产生的影响。证实了这两个因素之间存在可重复的乘法效应,并且该数据集的最佳建模方法是应用三线性因子分解模型。
提出的非靶向 LC-MS 脂质组学方法是一种强大的工具,可使用基于双线性和三线性因子分解模型的化学计量方法,根据设计因素之间的相互作用类型,研究这两个因素对大型溞脂质组的影响。