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基于机器学习指导的拉曼光谱和代谢组学的孕妇血浆预测早产研究

First Trimester Prediction of Preterm Birth in Patient Plasma with Machine-Learning-Guided Raman Spectroscopy and Metabolomics.

机构信息

Department of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50012, United States.

Nanovaccine Institute, Iowa State University, Ames, Iowa 50012, United States.

出版信息

ACS Appl Mater Interfaces. 2023 Aug 16;15(32):38185-38200. doi: 10.1021/acsami.3c04260. Epub 2023 Aug 7.

Abstract

Preterm birth (PTB) is the leading cause of infant deaths globally. Current clinical measures often fail to identify women who may deliver preterm. Therefore, accurate screening tools are imperative for early prediction of PTB. Here, we show that Raman spectroscopy is a promising tool for studying biological interfaces, and we examine differences in the maternal metabolome of the first trimester plasma of PTB patients and those that delivered at term (healthy). We identified fifteen statistically significant metabolites that are predictive of the onset of PTB. Mass spectrometry metabolomics validates the Raman findings identifying key metabolic pathways that are enriched in PTB. We also show that patient clinical information alone and protein quantification of standard inflammatory cytokines both fail to identify PTB patients. We show that synergistic integration of Raman and clinical data guided with machine learning results in an unprecedented 85.1% accuracy of risk stratification of PTB in the first trimester that is currently not possible clinically. Correlations between metabolites and clinical features highlight the body mass index and maternal age as contributors of metabolic rewiring. Our findings show that Raman spectral screening may complement current prenatal care for early prediction of PTB, and our approach can be translated to other patient-specific biological interfaces.

摘要

早产(PTB)是全球婴儿死亡的主要原因。目前的临床指标往往无法识别可能早产的女性。因此,准确的筛查工具对于早产的早期预测至关重要。在这里,我们表明拉曼光谱是研究生物界面的一种很有前途的工具,我们检查了 PTB 患者和足月(健康)分娩患者的孕早期血浆中母体代谢组的差异。我们确定了十五个具有统计学意义的代谢物,可预测 PTB 的发生。质谱代谢组学验证了拉曼的发现,确定了富含 PTB 的关键代谢途径。我们还表明,仅患者的临床信息和标准炎症细胞因子的蛋白质定量都无法识别 PTB 患者。我们表明,拉曼和临床数据的协同整合,辅以机器学习的结果,可实现目前临床上不可能的孕早期 PTB 风险分层的前所未有的 85.1%的准确率。代谢物与临床特征之间的相关性突出了体重指数和产妇年龄是代谢重排的贡献者。我们的研究结果表明,拉曼光谱筛选可能补充目前的产前护理,以早期预测 PTB,并且我们的方法可以转化为其他患者特定的生物界面。

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