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大范围的差异适应和濒危亚洲紫檀的基因组偏移。

Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods.

机构信息

Department of Biology, University of Oxford, Oxford OX1 3RB, United Kingdom.

Institute of Forest and Wildlife Research and Development, Phnom Penh, Cambodia.

出版信息

Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2301603120. doi: 10.1073/pnas.2301603120. Epub 2023 Aug 7.

DOI:10.1073/pnas.2301603120
PMID:37549265
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10438386/
Abstract

In the billion-dollar global illegal wildlife trade, rosewoods have been the world's most trafficked wild product since 2005. and are the most sought-after rosewoods in the Greater Mekong Subregion. They are exposed to significant genetic risks and the lack of knowledge on their adaptability limits the effectiveness of conservation efforts. Here, we present genome assemblies and range-wide genomic scans of adaptive variation, together with predictions of genomic offset to climate change. Adaptive genomic variation was differentially associated with temperature and precipitation-related variables between the species, although their natural ranges overlap. The findings are consistent with differences in pioneering ability and in drought tolerance. We predict their genomic offsets will increase over time and with increasing carbon emission pathway but at a faster pace in than in . These results and the distinct gene-environment association in the eastern coastal edge of Vietnam suggest species-specific conservation actions: germplasm representation across the range in and focused on hotspots of genomic offset in . We translated our genomic models into a seed source matching application, , to rapidly inform restoration efforts. Our ecological genomic research uncovering contrasting selection forces acting in sympatric rosewoods is of relevance to conserving tropical trees globally and combating risks from climate change.

摘要

在价值数十亿美元的全球非法野生动植物贸易中,紫檀木自 2005 年以来一直是全球交易最频繁的野生产品。 和 是大湄公河次区域最受欢迎的紫檀木。它们面临着巨大的遗传风险,而且对其适应性的了解有限,这限制了保护工作的有效性。在这里,我们展示了基因组组装和全范围的适应性变异基因组扫描,以及对气候变化的基因组偏移的预测。适应性基因组变异与物种之间的温度和降水相关变量有差异相关,尽管它们的自然范围重叠。这一发现与各自的开拓能力和耐旱性差异相一致。我们预测它们的基因组偏移将随着时间的推移和碳排放途径的增加而增加,但在 中的增加速度比在 中更快。这些结果以及越南东海岸边缘的明显基因-环境关联表明,需要采取特定于物种的保护行动:在 中代表整个分布范围,在 中则集中在基因组偏移的热点上。我们将我们的基因组模型转化为种子来源匹配应用程序 , ,以快速为恢复工作提供信息。我们的生态基因组研究揭示了在同域紫檀木中起作用的相反选择力,这对于保护全球热带树木和应对气候变化风险具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/3d87b89c5825/pnas.2301603120fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/8e59dcc9b6fa/pnas.2301603120fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/b8ad4ff9f4b9/pnas.2301603120fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/c4b0d240804b/pnas.2301603120fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/fea5ced779d8/pnas.2301603120fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/ad1365915ead/pnas.2301603120fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/8b6a46ae309f/pnas.2301603120fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/3d87b89c5825/pnas.2301603120fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/8e59dcc9b6fa/pnas.2301603120fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/b8ad4ff9f4b9/pnas.2301603120fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/c4b0d240804b/pnas.2301603120fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/fea5ced779d8/pnas.2301603120fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/ad1365915ead/pnas.2301603120fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/8b6a46ae309f/pnas.2301603120fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/10438386/3d87b89c5825/pnas.2301603120fig07.jpg

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