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在根瘤农杆菌 ADP-葡萄糖焦磷酸化酶中,一个关键的亚基间相互作用对于别构信号的传递。

A critical inter-subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase.

机构信息

Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois, USA.

(UNL-CONICET), and FBCB, Santa Fe, Argentina.

出版信息

Protein Sci. 2023 Sep;32(9):e4747. doi: 10.1002/pro.4747.

DOI:10.1002/pro.4747
PMID:37551561
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10461462/
Abstract

ADP-glucose pyrophosphorylase is a key regulatory enzyme involved in starch and glycogen synthesis in plants and bacteria, respectively. It has been hypothesized that inter-subunit communications are important for the allosteric effect in this enzyme. However, no specific interactions have been identified as part of the regulatory signal. The enzyme from Agrobacterium tumefaciens is a homotetramer allosterically regulated by fructose 6-phosphate and pyruvate. Three pairs of distinct subunit-subunit interfaces are present. Here we focus on an interface that features two symmetrical interactions between Arg11 and Asp141 from one subunit with residues Asp141 and Arg11 of the neighbor subunit, respectively. Previously, scanning mutagenesis showed that a mutation at the Arg11 position disrupted the activation of the enzyme. Considering the distance of these residues from the allosteric and catalytic sites, we hypothesized that the interaction between Arg11 and Asp141 is critical for allosteric signaling rather than effector binding. To prove our hypothesis, we mutated those two sites (D141A, D141E, D141N, D141R, R11D, and R11K) and performed kinetic and binding analysis. Mutations that altered the charge affected the regulation the most. To prove that the interaction per se (rather than the presence of specific residues) is critical, we partially rescued the R11D protein by introducing a second mutation (R11D/D141R). This could not restore the activator effect on k , but it did rescue the effect on substrate affinity. Our results indicate the critical functional role of Arg11 and Asp141 to relay the allosteric signal in this subunit interface.

摘要

ADP-葡萄糖焦磷酸化酶是一种关键的调节酶,分别参与植物和细菌中淀粉和糖原的合成。据推测,亚基间的通讯对于该酶的变构效应很重要。然而,作为调节信号的一部分,尚未确定特定的相互作用。根瘤农杆菌的酶是一种同四聚体,受果糖 6-磷酸和丙酮酸的变构调节。存在三个不同的亚基-亚基界面。在这里,我们重点关注一个特征为两个对称相互作用的界面,一个亚基上的 Arg11 和 Asp141 与相邻亚基上的 Asp141 和 Arg11 残基分别相互作用。以前的扫描突变实验表明,Arg11 位置的突变会破坏酶的激活。考虑到这些残基与变构和催化位点的距离,我们假设 Arg11 和 Asp141 之间的相互作用对于变构信号传递而非效应物结合至关重要。为了验证我们的假设,我们突变了这两个位点(D141A、D141E、D141N、D141R、R11D 和 R11K)并进行了动力学和结合分析。改变电荷的突变对调节的影响最大。为了证明相互作用本身(而不是特定残基的存在)至关重要,我们通过引入第二个突变(R11D/D141R)部分挽救了 R11D 蛋白。这不能恢复对 k 的激活剂效应,但确实挽救了对底物亲和力的影响。我们的结果表明 Arg11 和 Asp141 在这个亚基界面中继变构信号的关键功能作用。

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