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从加拿大萨斯喀彻温省一头健康的饲养场小牛身上分离出的完整基因组序列。

Complete genome sequence of isolated from a healthy feedlot calf in Saskatchewan, Canada.

作者信息

Deschner Darien, Periyasamy Dhinesh, Waldner Cheryl L, Fernando Champika, Hill Janet E

机构信息

Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan , Saskatoon, Saskatchewan, Canada.

Prairie Diagnostic Services, Inc. , Saskatoon, Saskatchewan, Canada.

出版信息

Microbiol Resour Announc. 2023 Sep 19;12(9):e0045623. doi: 10.1128/MRA.00456-23. Epub 2023 Aug 9.

DOI:10.1128/MRA.00456-23
PMID:37555671
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10508101/
Abstract

A lack of whole genome sequences for spp. other than complicates their identification. Here, we present the genome sequence of 39324.S-11, isolated from a healthy calf on a feedlot in Saskatchewan, Canada, and compare it to ZY190616, which is currently the only other isolate of for which sequence is publicly available.

摘要

除了[具体物种]之外,其他[物种名称]缺乏全基因组序列,这使得它们的鉴定变得复杂。在此,我们展示了从加拿大萨斯喀彻温省一个饲养场的健康小牛身上分离出的[物种名称]39324.S-11的基因组序列,并将其与ZY190616进行比较,ZY190616是目前公开可获得序列的该[物种名称]的唯一其他分离株。

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本文引用的文献

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Changes in the phenotypic susceptibility of isolates to macrolide antimicrobials during the early feeding period following metaphylactic tulathromycin use in western Canadian feedlot calves.在加拿大西部育肥场小牛使用米托霉素进行群体预防后的早期饲养期, 分离株对大环内酯类抗菌药物表型敏感性的变化。
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Mannheimia bovis sp. nov., Isolated from a Dead Cow with Hemorrhagic Pneumonia.牛曼氏杆菌新种,从一头死于出血性肺炎的奶牛中分离得到。
Curr Microbiol. 2021 Apr;78(4):1692-1698. doi: 10.1007/s00284-021-02384-1. Epub 2021 Feb 26.
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Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
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RefSeq: an update on prokaryotic genome annotation and curation.RefSeq:原核生物基因组注释和管理的最新进展。
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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