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利用植物m6A编辑器对拟南芥进行靶向mRNA去甲基化

Targeted mRNA demethylation in Arabidopsis using plant m6A editor.

作者信息

Fang Ruiqiu, Chen Xiaolong, Shen Jie, Wang Bin

机构信息

Institute of Maize and Featured Upland Crops, Zhejiang Academy of Agricultural Sciences, Dongyang, 322100, Zhejiang, China.

Department of Life Sciences, Changzhi University, Changzhi, 046011, Shanxi, China.

出版信息

Plant Methods. 2023 Aug 9;19(1):81. doi: 10.1186/s13007-023-01053-7.

DOI:10.1186/s13007-023-01053-7
PMID:37559087
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10413771/
Abstract

BACKGROUND

N6-methyladenosine (m6A) is an important epigenetic modification involved in RNA stability and translation regulation. Manipulating the expression of RNA m6A methyltransferases or demethylases makes it difficult to study the effect of specific RNA methylation.

RESULTS

In this study, we report the development of Plant m6A Editors (PMEs) using dLwaCas13a (from L. wadei) and human m6A demethylase ALKBH5 catalytic domain. PMEs specifically demethylates m6A of targeted mRNAs (WUS, STM, FT, SPL3 and SPL9) to increase mRNAs stability. In addition, we discovered that a double ribozyme system can significantly improve the efficiency of RNA editing.

CONCLUSION

PMEs specifically demethylates m6A of targeted mRNAs to increase mRNAs stability, suggesting that this engineered tool is instrumental for biotechnological applications.

摘要

背景

N6-甲基腺苷(m6A)是一种重要的表观遗传修饰,参与RNA稳定性和翻译调控。操纵RNA m6A甲基转移酶或去甲基酶的表达使得研究特定RNA甲基化的作用变得困难。

结果

在本研究中,我们报道了利用dLwaCas13a(来自瓦氏李斯特菌)和人m6A去甲基酶ALKBH5催化结构域开发的植物m6A编辑器(PMEs)。PMEs特异性地使靶向mRNA(WUS、STM、FT、SPL3和SPL9)的m6A去甲基化,以提高mRNA的稳定性。此外,我们发现双核酶系统可以显著提高RNA编辑效率。

结论

PMEs特异性地使靶向mRNA的m6A去甲基化以提高mRNA的稳定性,表明这种工程工具对生物技术应用具有重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/34e0036fc332/13007_2023_1053_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/ccd0567b025e/13007_2023_1053_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/9accbc6c1a2a/13007_2023_1053_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/34e0036fc332/13007_2023_1053_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/ccd0567b025e/13007_2023_1053_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/9accbc6c1a2a/13007_2023_1053_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb5/10413771/34e0036fc332/13007_2023_1053_Fig3_HTML.jpg

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本文引用的文献

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2
All-in-one: a robust fluorescent fusion protein vector toolbox for protein localization and BiFC analyses in plants.一体化:用于植物中蛋白质定位和 BiFC 分析的稳健荧光融合蛋白载体工具盒。
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RNA demethylation increases the yield and biomass of rice and potato plants in field trials.
Plant Physiol. 2024 Oct 1;196(2):745-753. doi: 10.1093/plphys/kiae373.
RNA 去甲基化可提高田间试验中水稻和马铃薯植株的产量和生物量。
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Programmable mA modification of cellular RNAs with a Cas13-directed methyltransferase.利用 Cas13 指导的甲基转移酶对细胞 RNA 进行可编程的 mA 修饰。
Nat Biotechnol. 2020 Dec;38(12):1431-1440. doi: 10.1038/s41587-020-0572-6. Epub 2020 Jun 29.
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Targeted mRNA demethylation using an engineered dCas13b-ALKBH5 fusion protein.靶向 mRNA 去甲基化的工程化 dCas13b-ALKBH5 融合蛋白。
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