Department of Chemistry, Shanghai Stomatological Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, 200433, China.
Appl Biochem Biotechnol. 2024 Apr;196(4):2356-2366. doi: 10.1007/s12010-023-04652-1. Epub 2023 Aug 11.
Heatmaps are preferred visualization modes for biologists to display high-dimensional information from high-throughput omics data. Many software including website services and R packages are available to generate various types of customized heatmaps. Here, we describe oppHeatmap (omics pilot platform of heatmap), a new tool constructed to render different kinds of heatmaps through MATLAB. oppHeatmap is available for plotting ordinary heatmaps, hierarchical clustering, TreeMaps, microplates graph, sample correlation (full heatmap and upper and lower triangle parts), gene correlation (between columns or tables), and polar heatmaps. oppHeatmap can support the modification of borders, fonts, and colors to customize the final plots. oppHeatmap can not only read data from Microsoft Excel to generate specific heatmaps but also make Excel heatmaps by coloring each cell in Excel. The graphs can be stored in SVG (supported vector graph) format and modified by other SVG recognition software. oppHeatmap is designed by MATLAB AppDesigner with GUI (graphical user interface) operation. The program for oppHeatmap was available at https://github.com/HangZhouSheep/oppHeatmap .are diagramed by.
热图是生物学家用来显示高通量组学数据中高维信息的首选可视化模式。许多软件，包括网站服务和 R 包，都可用于生成各种类型的定制热图。在这里，我们描述了 oppHeatmap（热图的组学试验平台），这是一个新工具，通过 MATLAB 来渲染不同类型的热图。oppHeatmap 可用于绘制普通热图、层次聚类、TreeMaps、微孔板图、样本相关（全热图和上下三角部分）、基因相关（列或表之间）和极区热图。oppHeatmap 可以支持边框、字体和颜色的修改，以定制最终的图形。oppHeatmap 不仅可以从 Microsoft Excel 读取数据生成特定的热图，还可以通过在 Excel 中为每个单元格着色来制作 Excel 热图。图形可以以 SVG（可支持的矢量图形）格式存储，并可由其他 SVG 识别软件进行修改。oppHeatmap 是由 MATLAB AppDesigner 设计的，具有 GUI（图形用户界面）操作。oppHeatmap 的程序可在 https://github.com/HangZhouSheep/oppHeatmap 上获得。
