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基于 GEO 数据和 TCGA 数据的结直肠癌中 Hedgehog 相互作用蛋白的生物信息学分析。

Bioinformatics analysis of hedgehog interacting protein in colorectal cancer: a study based on GEO data and TCGA data.

机构信息

Department of Gastroenterology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, 510260, China.

Department of Gastroenterology, The Second Affiliated Hospital, School of Medicine, Institute of Gastroenterology, Zhejiang University, Hangzhou, 310000, China.

出版信息

BMC Gastroenterol. 2023 Aug 11;23(1):278. doi: 10.1186/s12876-023-02867-4.

Abstract

Colorectal cancer (CRC) is one of the most prevalent malignancies worldwide. Hedgehog Interacting Protein (HHIP) is evolutionarily conserved protein, which are important morphogens for a wide range of developmental processes,However, the specific role and mechanism of HHIP in CRC remains not fully understood. In this study, we first performed pan-cancer analysis for HHIP's expression via The Cancer Genome Atlas (TCGA) and The Genotype-Tissue Expression (GTEx) data and found that HHIP might be a potential anti-oncogene for CRC. Subsequently, non-coding RNAs (ncRNAs) contributing to down-regulated HHIP expression were identified through a combination of a series of in silico analyses, including expression and correlation analysis. Finally, the LINC02381/miR-577 complex was identified as the top potential upstream regulator of HHIP in CRC. In addition, HHIP expression level was significantly correlated with tumor immune cell infiltration, biomarkers of immune cells, and immune checkpoint expression. Overall, our findings clarified ncRNAs-mediated down-regulation of HHIP which was associated with poor prognosis and tumor immune infiltration in CRC.

摘要

结直肠癌(CRC)是全球最常见的恶性肿瘤之一。Hedgehog 相互作用蛋白(HHIP)是进化上保守的蛋白质,是广泛的发育过程中重要的形态发生素,然而,HHIP 在 CRC 中的具体作用和机制尚不完全清楚。在这项研究中,我们首先通过癌症基因组图谱(TCGA)和基因型-组织表达(GTEx)数据进行了 HHIP 表达的泛癌分析,发现 HHIP 可能是 CRC 的潜在抑癌基因。随后,通过一系列的计算机分析,包括表达和相关性分析,确定了导致 HHIP 表达下调的非编码 RNA(ncRNA)。最后,鉴定出 LINC02381/miR-577 复合物是 CRC 中 HHIP 的顶级潜在上游调节因子。此外,HHIP 的表达水平与肿瘤免疫细胞浸润、免疫细胞标志物和免疫检查点表达显著相关。总的来说,我们的研究结果阐明了 ncRNA 介导的 HHIP 下调与 CRC 不良预后和肿瘤免疫浸润有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8580/10422795/2527ed6c981c/12876_2023_2867_Fig1_HTML.jpg

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