Bezmialem Vakif University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 34093 Fatih, Istanbul, Türkiye.
University of Zabol, Faculty of Science, Department of Chemistry, Zabol, 98615-538, Iran.
Chem Biodivers. 2023 Sep;20(9):e202301089. doi: 10.1002/cbdv.202301089. Epub 2023 Sep 4.
Herein, new derivatives of α,β-unsaturated ketones based on oleanolic acid (4 a-i) were designed, synthesized, characterized, and tested against human prostate cancer (PC3). According to the in vitro cytotoxic study, title compounds (4 a-i) showed significantly lower toxicity toward healthy cells (HUVEC) in comparison with the reference drug doxorubicin. The compounds with the lowest IC values on PC3 cell lines were 4 b (7.785 μM), 4 c (8.869 μM), and 4 e (8.765 μM). The results of the ADME calculations showed that the drug-likeness parameters were within the defined ranges according to Lipinski's and Jorgensen's rules. For the most potent compounds 4 b, 4 c, and 4 e, a molecular docking analysis using the induced fit docking (IFD) protocol was performed against three protein targets (PARP, PI3K, and mTOR). Based on the IFD scores, compound 4 b had the highest calculated affinity for PARP1, while compound 4 c had higher affinities for mTOR and PI3K. The MM-GBSA calculations showed that the most potent compounds had high binding affinities and formed stable complexes with the protein targets. Finally, a 50 ns molecular dynamics simulation was performed to study the behavior of protein target complexes under in silico physiological conditions.
在此,我们设计、合成并表征了基于齐墩果酸的α,β-不饱和酮新衍生物(4a-i),并对其进行了人前列腺癌细胞(PC3)的活性测试。根据体外细胞毒性研究,标题化合物(4a-i)对健康细胞(HUVEC)的毒性明显低于参考药物阿霉素。对 PC3 细胞系具有最低 IC 值的化合物为 4b(7.785 μM)、4c(8.869 μM)和 4e(8.765 μM)。ADME 计算结果表明,根据 Lipinski 和 Jorgensen 规则,药物样参数均在定义范围内。对于最有效的化合物 4b、4c 和 4e,我们使用诱导契合对接(IFD)方案对三个蛋白靶标(PARP、PI3K 和 mTOR)进行了分子对接分析。根据 IFD 评分,化合物 4b 对 PARP1 具有最高的计算亲和力,而化合物 4c 对 mTOR 和 PI3K 具有更高的亲和力。MM-GBSA 计算表明,最有效的化合物具有高结合亲和力,并与蛋白靶标形成稳定的复合物。最后,我们进行了 50 ns 的分子动力学模拟,以研究在计算机理生理条件下蛋白靶复合物的行为。