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重要的“垃圾”:转座元件在熊蜂基因组进化中的作用

'Junk' that matters: the role of transposable elements in bumblebee genome evolution.

作者信息

Sun Cheng, Zhang Aibing, Chen Jinfeng, Schaack Sarah

机构信息

College of Life Sciences, Capital Normal University, Beijing 100048, China.

College of Life Sciences, Capital Normal University, Beijing 100048, China.

出版信息

Curr Opin Insect Sci. 2023 Oct;59:101103. doi: 10.1016/j.cois.2023.101103. Epub 2023 Aug 19.

Abstract

Transposable elements (TEs) are mobile DNA sequences that are widely distributed in eukaryotic genomes, where they are known to serve as a major force in genome evolution. The phenotypic impacts of TEs, while less well-studied, have also been discovered. Bumblebees are globally important pollinators in natural ecosystems and agriculture. Although TEs comprise a small fraction of bumblebee genomes, emerging evidence suggests that TEs are the major contributor of genome size variation across species and are involved in the formation of new coding and regulatory sequences. We review recent discoveries related to TEs in bumblebees, as well as outlining three key questions for the future of the field. In the future, we argue long-read sequencing technologies and genome editing techniques will help us identify TEs in bumblebees, unveil mechanisms that could account for their silencing and limited abundance, and uncover their contributions to phenotypic diversification, ecological adaptation, and speciation.

摘要

转座元件(TEs)是可移动的DNA序列,广泛分布于真核生物基因组中,在基因组进化中是一股主要力量。虽然对TEs的表型影响研究较少,但也已被发现。熊蜂是自然生态系统和农业中全球重要的传粉者。尽管TEs在熊蜂基因组中占比小,但新出现的证据表明,TEs是物种间基因组大小变异的主要贡献者,并参与新编码和调控序列的形成。我们综述了与熊蜂中TEs相关的最新发现,并概述了该领域未来的三个关键问题。我们认为,未来长读长测序技术和基因组编辑技术将帮助我们识别熊蜂中的TEs,揭示可能导致其沉默和丰度有限的机制,并揭示它们对表型多样化、生态适应和物种形成的贡献。

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