College of Life Science and Agricultural Engineering, Nanyang Normal University, Nanyang, Henan 473061, PR China.
Laboratory Centre of Life Science, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu 210095, PR China.
Int J Syst Evol Microbiol. 2023 Aug;73(8). doi: 10.1099/ijsem.0.006007.
A bacterial strain designated as LB-31 was isolated from activated sludge. Strain LB-31 was Gram-stain-negative, non-spore-forming and rod-shaped with a single polar flagellum. The isolate grew at 15-37 °C, pH 5.5-8.5 and 0.5-8.5 % (w/v) NaCl. Genome sequencing revealed a genome size of 3.55 Mb, a G+C content of 61.1 mol% and 3222 protein-coding genes. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain LB-31 formed a phyletic lineage that was distinct from the three known genus within the family . The 16S rRNA gene sequence similarity of strain LB-31 to all recognized bacterial species was no more than 94 %. Average nucleotide identity and digital DNA-DNA hybridization values between strain LB-31 and its phylogenetic neighbours were below 72 and 22 %, respectively. The average amino acid identity values for strain LB-31 and its closed phylogenetic neighbours and were below 63%, supporting that strain LB-31 was a member of a novel genus. The predominant respiratory quinone is Q-10, the fatty acid profile predominantly consisted of iso-C 9, iso-C, iso-C and summed feature 3 (comprising iso-C2-OH/C 7), and the major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol. The combined genotypic and phenotypic data show that strain LB-31 represents a novel species of a novel genus in the family , for which the name gen. nov., sp. nov. is proposed. The type strain of is LB-31 (=GDMCC 1.3625=KCTC 92687).
从活性污泥中分离到一株被命名为 LB-31 的细菌菌株。菌株 LB-31 革兰氏阴性,不产芽孢,呈杆状,有一个单极鞭毛。该分离株在 15-37°C、pH5.5-8.5 和 0.5-8.5%(w/v)NaCl 下生长。基因组测序揭示其基因组大小为 3.55 Mb,G+C 含量为 61.1 mol%,含有 3222 个蛋白编码基因。基于 16S rRNA 基因序列的系统发育分析表明,菌株 LB-31 形成了一个与家族内已知的三个属都不同的分支。菌株 LB-31 与所有公认的细菌物种的 16S rRNA 基因序列相似性不超过 94%。菌株 LB-31 与其系统发育近邻之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别低于 72%和 22%。菌株 LB-31 与其密切相关的属 和 的平均氨基酸同一性值低于 63%,表明 LB-31 菌株是一个新属的成员。主要的呼吸醌是 Q-10,脂肪酸图谱主要由 iso-C9、iso-C11、iso-C15 和特征脂肪酸 3(包含 iso-C2-OH/C7)组成,主要的极性脂是磷脂酰乙醇胺、双磷脂酰甘油和磷脂酰甘油。综合表型和基因型数据表明,菌株 LB-31 代表了家族中的一个新属的新种,建议将其命名为 属,新种,新名。的模式菌株为 LB-31(=GDMCC 1.3625=KCTC 92687)。