FAIR Data Innovations Hub, California Medical Innovations Institute, San Diego, CA, 92121, USA.
Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, 75015, Paris, France.
Sci Data. 2023 Aug 23;10(1):557. doi: 10.1038/s41597-023-02463-x.
Findable, Accessible, Interoperable, and Reusable (FAIR) guiding principles tailored for research software have been proposed by the FAIR for Research Software (FAIR4RS) Working Group. They provide a foundation for optimizing the reuse of research software. The FAIR4RS principles are, however, aspirational and do not provide practical instructions to the researchers. To fill this gap, we propose in this work the first actionable step-by-step guidelines for biomedical researchers to make their research software compliant with the FAIR4RS principles. We designate them as the FAIR Biomedical Research Software (FAIR-BioRS) guidelines. Our process for developing these guidelines, presented here, is based on an in-depth study of the FAIR4RS principles and a thorough review of current practices in the field. To support researchers, we have also developed a workflow that streamlines the process of implementing these guidelines. This workflow is incorporated in FAIRshare, a free and open-source software application aimed at simplifying the curation and sharing of FAIR biomedical data and software through user-friendly interfaces and automation. Details about this tool are also presented.
面向研究软件的可发现性、可访问性、互操作性和可重用性 (FAIR) 指导原则由 FAIR for Research Software (FAIR4RS) 工作组提出。它们为优化研究软件的重用提供了基础。然而,FAIR4RS 原则是理想的,并没有为研究人员提供实际的指导。为了填补这一空白,我们在这项工作中提出了生物医学研究人员使他们的研究软件符合 FAIR4RS 原则的第一个可操作的逐步指南,我们将其命名为 FAIR Biomedical Research Software (FAIR-BioRS) 指南。我们在这里介绍的开发这些指南的过程是基于对 FAIR4RS 原则的深入研究和对该领域当前实践的彻底审查。为了支持研究人员,我们还开发了一个工作流程,简化了实施这些指南的过程。该工作流程包含在 FAIRshare 中,这是一个免费的开源软件应用程序,旨在通过用户友好的界面和自动化简化 FAIR 生物医学数据和软件的策展和共享。关于该工具的详细信息也将介绍。