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一种用于预测桥本甲状腺炎伴发病的新型混合模型。

A novel hybrid model to predict concomitant diseases for Hashimoto's thyroiditis.

机构信息

Department of Computer Engineering, Istanbul Arel University, 34537, Buyukcekmece, Istanbul, Turkey.

出版信息

BMC Bioinformatics. 2023 Aug 24;24(1):319. doi: 10.1186/s12859-023-05443-5.

Abstract

Hashimoto's thyroiditis is an autoimmune disorder characterized by the destruction of thyroid cells through immune-mediated mechanisms involving cells and antibodies. The condition can trigger disturbances in metabolism, leading to the development of other autoimmune diseases, known as concomitant diseases. Multiple concomitant diseases may coexist in a single individual, making it challenging to diagnose and manage them effectively. This study aims to propose a novel hybrid algorithm that classifies concomitant diseases associated with Hashimoto's thyroiditis based on sequences. The approach involves building distinct prediction models for each class and using the output of one model as input for the subsequent one, resulting in a dynamic decision-making process. Genes associated with concomitant diseases were collected alongside those related to Hashimoto's thyroiditis, and their sequences were obtained from the NCBI site in fasta format. The hybrid algorithm was evaluated against common machine learning algorithms and their various combinations. The experimental results demonstrate that the proposed hybrid model outperforms existing classification methods in terms of performance metrics. The significance of this study lies in its two distinctive aspects. Firstly, it presents a new benchmarking dataset that has not been previously developed in this field, using diverse methods. Secondly, it proposes a more effective and efficient solution that accounts for the dynamic nature of the dataset. The hybrid approach holds promise in investigating the genetic heterogeneity of complex diseases such as Hashimoto's thyroiditis and identifying new autoimmune disease genes. Additionally, the results of this study may aid in the development of genetic screening tools and laboratory experiments targeting Hashimoto's thyroiditis genetic risk factors. New software, models, and techniques for computing, including systems biology, machine learning, and artificial intelligence, are used in our study.

摘要

桥本甲状腺炎是一种自身免疫性疾病,其特征是通过涉及细胞和抗体的免疫介导机制破坏甲状腺细胞。这种情况会引发代谢紊乱,导致其他自身免疫性疾病的发展,这些疾病被称为伴发疾病。多种伴发疾病可能同时存在于一个个体中,这使得有效诊断和管理变得具有挑战性。本研究旨在提出一种新的基于序列的分类桥本甲状腺炎伴发疾病的混合算法。该方法涉及为每个类别构建不同的预测模型,并使用一个模型的输出作为后续模型的输入,从而形成一个动态决策过程。收集与伴发疾病相关的基因以及与桥本甲状腺炎相关的基因,并以 fasta 格式从 NCBI 网站获取它们的序列。该混合算法与常见的机器学习算法及其各种组合进行了评估。实验结果表明,该混合模型在性能指标方面优于现有的分类方法。本研究的意义在于其两个独特的方面。首先,它提出了一个新的基准数据集,使用了多种方法,以前在这个领域没有开发过。其次,它提出了一种更有效和高效的解决方案,考虑了数据集的动态性质。混合方法有望用于研究桥本甲状腺炎等复杂疾病的遗传异质性,并鉴定新的自身免疫性疾病基因。此外,本研究的结果可能有助于开发针对桥本甲状腺炎遗传风险因素的遗传筛选工具和实验室实验。我们的研究使用了新的软件、模型和计算技术,包括系统生物学、机器学习和人工智能。

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