Division of Gastroenterology & Hepatology, Department of Internal Medicine, Saint Louis University School of Medicine, St. Louis, MO 63104, USA.
School of Clinical Medicine, Henan University of Science and Technology, Luoyang 471000, China.
Viruses. 2023 Jul 27;15(8):1635. doi: 10.3390/v15081635.
Anellovirus (AV) is a ubiquitous virus in the human population. Individuals can be infected with multiple AV genera and species to form a heterogeneous repertoire, termed the anellome. Using advanced methods, we examined the anellomes from 12 paired serum and liver samples, as well as 2701 subjects with different clinical diagnoses. Overall, anellomes are remarkably individualized, with significant among-group differences (Kruskal-Wallis test = 6.6 × 10 for richness and = 7.48 × 10 for Shannon entropy). High dissimilarity scores (beta diversity) were observed between patient groups, except for paired serum and liver samples. At the population level, the relative abundance of combinational AV genus (torque teno mini viruses, TTMV), and (torque teno midi viruses, TTMDV) exhibited an exponential distribution with a low bound point at 32%. Defined by this value, the AV TTMV/TTMDV-expanded anellome was significantly enriched among patients with acute liver failure (31.7%) and liver transplantation (40.7%), compared with other patient groups (χ test: = 4.1 × 10-3.2 × 10). Therefore, anellome heterogeneity may be predictive of clinical outcomes in certain diseases, such as liver disease. The consistency of anellome between paired serum and liver samples indicates that a liquid biopsy approach would be suitable for longitudinal studies to clarify the causality of the AV TTMV/TTMDV-expanded anellome in the outcomes of liver disease.
圆环病毒(AV)是人类群体中普遍存在的病毒。个体可以感染多种 AV 属和种,形成一个异质的组合,称为环病毒组。我们使用先进的方法,检测了来自 12 对血清和肝脏样本以及 2701 名不同临床诊断患者的环病毒组。总体而言,环病毒组非常个体化,组间差异显著(丰富度 Kruskal-Wallis 检验 = 6.6×10,Shannon 熵 = 7.48×10)。除了配对的血清和肝脏样本外,患者组之间观察到高不相似评分(β多样性)。在人群水平上,组合的 AV 属(扭结病毒,TTMV)和 (扭结微病毒,TTMDV)的相对丰度呈指数分布,低值点为 32%。根据该值定义,与其他患者组相比,急性肝衰竭(31.7%)和肝移植(40.7%)患者的 AV TTMV/TTMDV 扩展环病毒组明显富集(χ检验:= 4.1×10-3.2×10)。因此,环病毒组的异质性可能对某些疾病(如肝病)的临床结果具有预测性。配对的血清和肝脏样本中环病毒组的一致性表明,液体活检方法适合进行纵向研究,以阐明 AV TTMV/TTMDV 扩展环病毒组在肝病结局中的因果关系。